View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0502_low_7 (Length: 313)
Name: NF0502_low_7
Description: NF0502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0502_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13020949 - 13020742
Alignment:
| Q |
1 |
aacaggatgatacttcttcttcttcatactattgcttttgttgttcaattttctgaacagaaattgaactaccaaaaaagctaaacacgcagacaaagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||| || |||| | |||||||||||| |
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| T |
13020949 |
aacaggatgatacttcttcttcttcatactattgcttttgttgttcaattttctgagcagaagttgaaccaacaaaagagttaaagatgcagacaaagct |
13020850 |
T |
|
| Q |
101 |
gaaaaaagataaggatttaatagaaaatccataatggattggaatagcatggtggaggtggcgatggttttttgctttaaagaagaagttagtgttgctc |
200 |
Q |
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| T |
13020849 |
gcaaaaagaagaggatttgatagaaaatccatgatggattggaatagcatggtggaggtggcgatggttttttgctttaaagaagaagttagtgttgctc |
13020750 |
T |
|
| Q |
201 |
cagagtca |
208 |
Q |
| |
|
|||||||| |
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| T |
13020749 |
cagagtca |
13020742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 13072894 - 13073101
Alignment:
| Q |
1 |
aacaggatgatacttcttcttcttcatactattgcttttgttgttcaattttctgaacagaaattgaactaccaaaaaagctaaacacgcagacaaagct |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||||| | ||||| || |||| | |||||||||||| |
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| T |
13072894 |
aacaggatgatactttttcttcttcatgttattgcttttgttgttcaattttctgagcagaagttgaaccaacaaaagagttaaagatgcagacaaagct |
13072993 |
T |
|
| Q |
101 |
gaaaaaagataaggatttaatagaaaatccataatggattggaatagcatggtggaggtggcgatggttttttgctttaaagaagaagttagtgttgctc |
200 |
Q |
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| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13072994 |
gcaaaaagaaaaggatttgatagaaaatccatgatggattggaatagcatggtggagatggcgatggttttttgctttaaagaagaagttagtgttactc |
13073093 |
T |
|
| Q |
201 |
cagagtca |
208 |
Q |
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|||||||| |
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|
| T |
13073094 |
cagagtca |
13073101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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