View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0503_high_2 (Length: 284)
Name: NF0503_high_2
Description: NF0503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0503_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 43453439 - 43453158
Alignment:
| Q |
1 |
cgatgcataacttcacatgagtgacaagcctcaacaacattaacaatcgttcttgcgagtttagcagcctttctctcggtgtaatgtctcctttccacaa |
100 |
Q |
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| T |
43453439 |
cgatgcataactccacgtgagtgacaagcctcaacaacattaacaatcgttcttgcgagtttagcagcctttctctcggtgtaatgtctcctttccacaa |
43453340 |
T |
|
| Q |
101 |
tcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccggatcttcataagctccttttattgatatcacatttggaatccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453339 |
tcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccggatcttcataagctccttttattgatatcacatttggaatccc |
43453240 |
T |
|
| Q |
201 |
aactaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctctaaacaattttacctttggtactgct |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43453239 |
aactaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctctaaacaattttacctttggtattgct |
43453158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 3 - 275
Target Start/End: Complemental strand, 43462876 - 43462604
Alignment:
| Q |
3 |
atgcataacttcacatgagtgacaagcctcaacaacattaacaatcgttcttgcgagtttagcagcctttctctcggtgtaatgtctcctttccacaatc |
102 |
Q |
| |
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|||||||||| ||| ||||||||||| |||||||||| |||| || |||||||| |||||||| |||||| |||| ||| | | |||| ||||||| |
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| T |
43462876 |
atgcataactccacgtgagtgacaagtctcaacaacactaacgatagttcttgcaagtttagcggccttttgttcggcgtagtaacctcttttcacaatc |
43462777 |
T |
|
| Q |
103 |
ctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccggatcttcataagctccttttattgatatcacatttggaatcccaa |
202 |
Q |
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|| ||||||||||||||||||| |||||||||||| |||||||||||||| | | |||||||||| |||||||||| ||||||||||| || |||||| |
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| T |
43462776 |
ctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatttagactcccaa |
43462677 |
T |
|
| Q |
203 |
ctaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctctaaacaattttacctttgg |
275 |
Q |
| |
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| |||||||||||||| | ||| ||||||||||||||||||| ||||| ||| |||||||| |||||||| |
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| T |
43462676 |
ccaagtgatgcattatcttaatttccctcctcacatcctctacatcatcatcttctaacaatttcacctttgg |
43462604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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