View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0503_low_2 (Length: 602)
Name: NF0503_low_2
Description: NF0503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0503_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 99 - 587
Target Start/End: Complemental strand, 43091705 - 43091217
Alignment:
| Q |
99 |
aacataaacaaaaaccatctagattttgtcggactcctcacaagtgaaaccttccctcccattgatgtgtagtcaccagcaaaactctttacattcacac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091705 |
aacataaacaaaaaccatctagattttgtcggactcctcacaagtgaaaccttccctcccattgatgtgtagtcaccagcaaaactctttacattcacac |
43091606 |
T |
|
| Q |
199 |
taccctttacttcttcttcatttctcttactcttcaagttagctatagaaccattactagatttcatggcctttgaatttgaagtgggtttagtacaann |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43091605 |
taccctttacttcttcttcatttctcttactcttcaagttagctatagaaccattactagatttcatggcctttgaatttgaagtgggtttagcacaatt |
43091506 |
T |
|
| Q |
299 |
nnnnnggttatgaggaacatattgatgatctttgaagggaatgagtttgccacagaagattatgttgtcatgaattgttgaagtgttgaattcttcactg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091505 |
tttttggttatgaggaacatattgatgatctttgaagggaatgagtttgccacagaagattatgttgtcatgaattgttgaagtgttgaattcttcactg |
43091406 |
T |
|
| Q |
399 |
aaaaactcaaacaagttnnnnnnnnnnnnnnnnnnnnggtgatccttgccataattggaaaaatcacctcgttgaggtgaaattgtggaatttggaaggt |
498 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43091405 |
aaaaactcaaacaagttatcatcatcatcatcatcatggtgatccttgccataattggaaaaatcaccccgttgaggtgaaattgtggaatttggaaggt |
43091306 |
T |
|
| Q |
499 |
cacaaagtgataaagtttcttcttcttcataatcatcatactcatcttgtagcaaagtactttcttcattccctacttcttcatgtgag |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43091305 |
cacaaagtgataaagtttcttcttcttcataatcatcatactcatcttgtagcaaagtactttcttcattccctacttcttgatgtgag |
43091217 |
T |
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