View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0505_high_1 (Length: 313)
Name: NF0505_high_1
Description: NF0505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0505_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 50505463 - 50505649
Alignment:
| Q |
1 |
agattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaaggcattatctgataagaaaaatacaagctaaacaa |
100 |
Q |
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| T |
50505463 |
agattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaaggcattatctgataagaaaaatacaagctaaacaa |
50505562 |
T |
|
| Q |
101 |
aatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatgaaaccattgcataacagcggacttttaaa |
187 |
Q |
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| T |
50505563 |
aatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatgaaaccattgcataacagcggacttttaaa |
50505649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 50505682 - 50505746
Alignment:
| Q |
183 |
ttaaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgatctgtg |
247 |
Q |
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| T |
50505682 |
ttaaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgatgtgtg |
50505746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 28733769 - 28733612
Alignment:
| Q |
1 |
agattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaaggcattatctgataagaaaaatacaagctaaacaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||| ||| ||||||| |||| ||||| ||||||||||||||||||||| |||| |||||| |
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| T |
28733769 |
agattgagaacaaagcacttcaaatcctgcaaaaatgttta---taattaataggcataaacaaagacattatctgataagaaaaatataagcaaaacaa |
28733673 |
T |
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| Q |
101 |
aatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatgaaa |
161 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |
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| T |
28733672 |
aatactaacatatcatggcctcatggggaatatataaatcattatctaaaatatgatgaaa |
28733612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 28733556 - 28733499
Alignment:
| Q |
185 |
aaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgat |
242 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
28733556 |
aaaaccattgcataaactatattggtgatttttaggttcgtgcatgatagtgattgat |
28733499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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