View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0505_high_3 (Length: 252)
Name: NF0505_high_3
Description: NF0505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0505_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 4812078 - 4811903
Alignment:
| Q |
22 |
tgatcttcagaatttcccctccaaatatcttttcttttattaatcaagattttatattgcctcatgcttaaactatctggtctacaacgatccattactt |
121 |
Q |
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| T |
4812078 |
tgatcttcagaatttcccctccaaatatcttttcttttattaatcaagattttatattgcctcatgcttaaactatctggtctacaacgatccatcactt |
4811979 |
T |
|
| Q |
122 |
caaacattattttttcttattacctgtttcacagatctgaatttgatgcaattaggatataaatttccatccctag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4811978 |
caaacattattttttcttattacctgtttcacagatctgaatttgatgcaattaggatataaatttccatccctag |
4811903 |
T |
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