View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0505_low_1 (Length: 425)
Name: NF0505_low_1
Description: NF0505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0505_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 30 - 416
Target Start/End: Complemental strand, 15590665 - 15590279
Alignment:
| Q |
30 |
gaatcgaaacatgatatattgaaataaacttcgcatataagaggcggcaccaccatgatgggtagaaccttgaataacgtcaatatttggcagtgctcta |
129 |
Q |
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| T |
15590665 |
gaatcgaaacatgatatattgaaataaacttcgcatataagaggcggcaccaccatgatgggtagaaccttgaataacgtcaatatttggcagtgctcta |
15590566 |
T |
|
| Q |
130 |
aaccaaaggcaccaaattgaatggcacggtggaacttctatgggtgccaagaaaaccaacataagctaaccaaacatgtaaagcaaaccaaacaaattgg |
229 |
Q |
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| T |
15590565 |
aaccaaagccaccaaattgaatggcacggtggaacttctatgggtgccaagaaaaccaacataagctaaccaaacatgtaaagcaaaccaaacaagttgg |
15590466 |
T |
|
| Q |
230 |
agattgttgattttgtgattgggaatttgatgagcaatgaaccacatattaattgttcatctccaagggtgagaaccaaatggtggagtggaaaccaatt |
329 |
Q |
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| T |
15590465 |
agattgttgattttgtgattgggaatttgatgagcaatgaaccacatattaattgttcatctccaagggtgagaaccaaatggtggagtggaaaccaatt |
15590366 |
T |
|
| Q |
330 |
aacaaagcacagaatgaattacacagtagctaacaaaatagccactatcatgaaaaatgatgaaatgctaaatgacgatgcctatga |
416 |
Q |
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| T |
15590365 |
aacaaagcacataatgaattacacagtagctaacaaaatagccactatcatgaaaaatgatgagatgttaaatgacgatgcctatga |
15590279 |
T |
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