View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0506_high_4 (Length: 275)
Name: NF0506_high_4
Description: NF0506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0506_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 39380976 - 39381181
Alignment:
| Q |
34 |
ctttttccctaaattattatggagagctaagagcttatgtaaataagttcaaaattgtttatggacatgtaataataaataagttgtttctataaactct |
133 |
Q |
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| T |
39380976 |
ctttttccctaaattattatggagagctaagagcttatgtaaataagttcaaaattgtttatggacatttaataataaataagttgtttctataaactct |
39381075 |
T |
|
| Q |
134 |
cttaaagagattcccaaatacttatgctagtaggtaatctcaaataaatcggtttaaatagacacttactatcttgattcaataatctgtttccacaggt |
233 |
Q |
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| T |
39381076 |
cttaaagatattcacaaatacttatgctagtaggtaatctcaaataagtcggtttaaatatacacttactatcttgattcaataatctgtttctgcaggt |
39381175 |
T |
|
| Q |
234 |
tctgct |
239 |
Q |
| |
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|||||| |
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| T |
39381176 |
tctgct |
39381181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 6987783 - 6987738
Alignment:
| Q |
63 |
agagcttatgtaaataagttcaaaattgtttatggacatgtaataa |
108 |
Q |
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|||||||||| ||||||||| ||||| |||||||||||||| |||| |
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| T |
6987783 |
agagcttatggaaataagttgaaaatagtttatggacatgtcataa |
6987738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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