View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0506_low_10 (Length: 218)

Name: NF0506_low_10
Description: NF0506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0506_low_10
NF0506_low_10
[»] chr5 (8 HSPs)
chr5 (30-105)||(8677275-8677350)
chr5 (36-105)||(8643308-8643377)
chr5 (36-105)||(8635881-8635951)
chr5 (37-81)||(8545365-8545409)
chr5 (36-91)||(8640227-8640281)
chr5 (37-110)||(8527645-8527719)
chr5 (48-92)||(1601349-1601392)
chr5 (37-81)||(9075532-9075576)
[»] chr8 (1 HSPs)
chr8 (37-78)||(44438680-44438721)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 8677350 - 8677275
Alignment:
Q  30 ttattttatctcattttcggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtagttatcatct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  8677350 ttattttatctcattttcggatgcaaatgatgtcttttttgtaaactttaattaagacgttcagtagttatcatct 8677275  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 8643377 - 8643308
Alignment:
Q  36 tatctcattttcggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtagttatcatct 105  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8643377 tatctcattttaggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtaattatcatct 8643308  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 8635951 - 8635881
Alignment:
Q  36 tatctcattttcggatgcaaatgatgtctttttt-gtaaactttaattcagatgttcagtagttatcatct 105  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  8635951 tatctcattttaggatgcaaatgatgtctttttttgtaaactttaattaagatgttcagtagttatcatct 8635881  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 8545365 - 8545409
Alignment:
Q  37 atctcattttcggatgcaaatgatgtcttttttgtaaactttaat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  8545365 atctcattttaggatgcaaatgatgtcttttttgtaaactttaat 8545409  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 8640281 - 8640227
Alignment:
Q  36 tatctcattttcggatgcaaatgatgtcttttttgtaaactttaattcagatgttc 91  Q
    ||||||||||| |||||||||  |||||||||| |||| |||||||||||||||||    
T  8640281 tatctcattttaggatgcaaacaatgtcttttt-gtaagctttaattcagatgttc 8640227  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 8527719 - 8527645
Alignment:
Q  37 atctcattttcggatgcaaatgatgtctt-ttttgtaaactttaattcagatgttcagtagttatcatctgtgct 110  Q
    ||||||||||  ||||||||||||||||| ||||||||| ||||||  ||||||||| || | || |||||||||    
T  8527719 atctcattttaagatgcaaatgatgtctttttttgtaaaatttaatctagatgttcattaatcattatctgtgct 8527645  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 1601349 - 1601392
Alignment:
Q  48 ggatgcaaatgatgtcttttttgtaaactttaattcagatgttca 92  Q
    |||||||||||||||| |||||||||||||||||  |||||||||    
T  1601349 ggatgcaaatgatgtc-tttttgtaaactttaatctagatgttca 1601392  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 9075532 - 9075576
Alignment:
Q  37 atctcattttcggatgcaaatgatgtcttttttgtaaactttaat 81  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||||    
T  9075532 atctcgttttaggatgcaaatgatggcttttttgttaactttaat 9075576  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 44438680 - 44438721
Alignment:
Q  37 atctcattttcggatgcaaatgatgtcttttttgtaaacttt 78  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  44438680 atctcattttaggaggcaaatgatgtcttttttctaaacttt 44438721  T

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