View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0506_low_3 (Length: 335)
Name: NF0506_low_3
Description: NF0506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0506_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 52873536 - 52873709
Alignment:
| Q |
30 |
ggtgctactgctgtgttgatgataaatgagagtaactttcccacccatacatcccattcatctcactcaaacgtatttcatttcgcatattatattgtcc |
129 |
Q |
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| T |
52873536 |
ggtgctactgctgtgttgatgataaatgagagtaacttccccacccatacatcccattcatttcactcaaacgtatttcatttcgcatattatattgtcc |
52873635 |
T |
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| Q |
130 |
atctcagcaccaaatcatatttatcctcattttcatgccctcgttttcttccaaactattaattctccatgtta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52873636 |
atctcagcaccaaatcatatttatcctcattttcatgccctcgttttcttccaaactattaattctccatgtta |
52873709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 52873752 - 52873823
Alignment:
| Q |
199 |
tgttagcatttctatttgctaattggaaagtaccttacattccatgcaatttgacttgttatatatatgttc |
270 |
Q |
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| T |
52873752 |
tgttagcatttctatttgctaattggaaagtaccttacattccatgcaatttgacttgttatatatatgttc |
52873823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 52873847 - 52873886
Alignment:
| Q |
294 |
ctcagagcttgttgagatggactgcccctatgatactaca |
333 |
Q |
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| T |
52873847 |
ctcagagcttgttgagatggactgccccaaggatactaca |
52873886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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