View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0506_low_4 (Length: 303)
Name: NF0506_low_4
Description: NF0506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0506_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 30 - 295
Target Start/End: Original strand, 39782583 - 39782848
Alignment:
| Q |
30 |
ttatcatggtaggtactaatagtgtctactcacttctttctatcaacgtaactataataacaagtaacaagtcatactaacaataaatcaagtttttata |
129 |
Q |
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| T |
39782583 |
ttatcatggtaggtactaatagtgtctactcacttctttctatcaacgtaactataataacaagtaacaagtcatcctaacaataaatcaagtttttata |
39782682 |
T |
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| Q |
130 |
catatgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgagatataatgaatgaaacaacttcgctaatcgcacctaaaatt |
229 |
Q |
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| T |
39782683 |
catatgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgagatataatgaatgaaacaacttcactaatcgcacctaaaatt |
39782782 |
T |
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| Q |
230 |
tcatccaattttttgttaagcattcctcttcattaatcattcgactgtgaaactctttcctatgat |
295 |
Q |
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| T |
39782783 |
tcatccaattttttgttaagcattcctcttcattaatcattcgactgtgaaactctttcctatgat |
39782848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 39789106 - 39789213
Alignment:
| Q |
95 |
aacaagtcatactaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgagatataa |
194 |
Q |
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| T |
39789106 |
aacaattcatcctaacaataaaccaagtttgtaaacatatgcatgttgatatccttt--ttttgtcaatttaaacctattctattttagaccagatataa |
39789203 |
T |
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| Q |
195 |
tgaatgaaac |
204 |
Q |
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||||| |||| |
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| T |
39789204 |
tgaattaaac |
39789213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 39793850 - 39793976
Alignment:
| Q |
90 |
caagtaacaagtcatactaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgaga |
189 |
Q |
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|||||||||| |||| |||||| |||| ||||||| ||||||||||||||||| ||| | | ||| ||||||||| |||||||| |||| || || || |
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| T |
39793850 |
caagtaacaactcatcctaacagtaaaccaagtttatatacatatgcaagttgttattc--tttttctgtcaatttcaacctattatattctttaccagt |
39793947 |
T |
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| Q |
190 |
tataatgaatg-aaacaacttcgctaatc |
217 |
Q |
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| T |
39793948 |
tataatgaatgaaaacaacttcgttaatc |
39793976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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