View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0506_low_8 (Length: 249)
Name: NF0506_low_8
Description: NF0506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0506_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 45565521 - 45565676
Alignment:
| Q |
65 |
cacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaatggggacatccatttgaacatagaactcct |
164 |
Q |
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| T |
45565521 |
cacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaatggggacatccatttgaacatggaactcct |
45565620 |
T |
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| Q |
165 |
ctctcttgaagtctcataagagtaggaagaatacctccaagcacacctcaaagaaa |
220 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45565621 |
ctcttttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaa |
45565676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 45286972 - 45286940
Alignment:
| Q |
107 |
ccaatcgttctcatagtttgtttcacaatgggg |
139 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
45286972 |
ccaatcgttctcgtagtttgtttcacaatgggg |
45286940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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