View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0507_low_1 (Length: 510)
Name: NF0507_low_1
Description: NF0507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0507_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 76 - 400
Target Start/End: Complemental strand, 468408 - 468088
Alignment:
| Q |
76 |
gatgaagagaagataaaatgctagttaggaaagattcagtttcaaaaataatgaaaacagnnnnnnnnnnnngttgacattttcactgttttctaaaatg |
175 |
Q |
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| T |
468408 |
gatgaagagaagataaaatgctagttaggaaagattcagtttcaaaaataatgaaaacagttttttttt---gttgacattttcactgttttctaaaatg |
468312 |
T |
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| Q |
176 |
caagacaagtgttcacttcaaagtcacnnnnnnnccttattaacaagcaaaactaacacaaattttaagagatgaaaatnnnnnnnggttttcacaaagt |
275 |
Q |
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| T |
468311 |
caagacacgtgttcacttcaaagtcactttttt-ccttattaacaagcaaaactaacacaaattttaagaaatgaaaataaaaaaagtttttcacaaagt |
468213 |
T |
|
| Q |
276 |
aaacagtcccttaatatcctgaagaattaagaatcaaaatatttgtttcaacttcaagaatggaaacaaaataccaggccatggcttttacctattcata |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
468212 |
aaacagtcccttaatatcctgaagaattaagaatcaaaatatttgtttcaacttcaagaatggaaacaaaataccaggccatggcttttacctattcata |
468113 |
T |
|
| Q |
376 |
aaactgcacgagtcacgacacaata |
400 |
Q |
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| T |
468112 |
aaactgcacgagtcacgacacaata |
468088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 481
Target Start/End: Original strand, 32509220 - 32509303
Alignment:
| Q |
397 |
aatactccatcttccatcttgtcataacgatttggtttaaaatccacccgacccggaacaaaaaaccactaaattaagaattctt |
481 |
Q |
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| T |
32509220 |
aatactccatcttcc-tcttgtcataacgatttggttgagaatccacccgccccgaaatgaaaaaccaccacattaagaattctt |
32509303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 17233967 - 17233913
Alignment:
| Q |
81 |
agagaagataaaatgctagttaggaaagattcagtttcaaaaataatgaaaacag |
135 |
Q |
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||||||||||| ||||||| |||||| ||| || || |||||||||||||||||| |
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| T |
17233967 |
agagaagataatatgctagctaggaatgatgcatttccaaaaataatgaaaacag |
17233913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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