View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0507_low_2 (Length: 480)
Name: NF0507_low_2
Description: NF0507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0507_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 53 - 439
Target Start/End: Complemental strand, 32581686 - 32581297
Alignment:
| Q |
53 |
cattaattattcttctactagattagcttgttatcatggggctcaactttgcaaattgtggtggaggtttcctttccctatcttttgggatttccttcac |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32581686 |
cattaattattcttctactagattagcttgttatcatggggctcaactttgcaaattgtggtggaggtttcctttccctatcttttgggatttccttcac |
32581587 |
T |
|
| Q |
153 |
cactcttcactgccactgcctatcaccttccaccacaaacatggattccttccctataccaacaagttgtatctccactagaatgac----ctgtcttca |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
32581586 |
cactcttcactgccactgcctatcaccttccaccacaaacatggattccttccctataccaacaagttgtatctccactagagtgacctgtctgtcttca |
32581487 |
T |
|
| Q |
249 |
atatcaaaatcaaaatcaaatttaaaaggctattcattcatttaacatatttgacagtcttttcttcttttcattttcaaacttcaacgtacgtgagcct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32581486 |
atatcaaaatcaaaatcaaatttaaaaggctattcattcatttaacatatttaacagtcttttcttcttttcattttcaaacttcaacgtacgtgagcct |
32581387 |
T |
|
| Q |
349 |
ctacactgggattattgaatcaactttacagtttccacaacaaaacttatgatccctccctactgtatgtatctttactgcttcatctcac |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32581386 |
ctacactgggattattgaatcaactttacagtttccactac-aaacttatgatccctccctactgtatgtatctttactgcttcatttcac |
32581297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 32656814 - 32656657
Alignment:
| Q |
74 |
attagcttgttatcatggggctcaactttgcaaattgtggtggaggtttcctttccctatcttttgggatt---------tccttcaccactcttcactg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32656814 |
attagcttgttatcatggggctcaactttgcaaactgtggtggagatatcctttccctatcttttgggatttcctccatttccttcaccactcttcaccc |
32656715 |
T |
|
| Q |
165 |
ccactgcctatcaccttccacc----aca---aacatggattccttccctataccaac |
215 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
32656714 |
ccactgcctctcaccttccacctccaacatccaacatggattccttccctatgccaac |
32656657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 32630863 - 32630789
Alignment:
| Q |
74 |
attagcttgttatcatggggctcaactttgcaaattgtggtggaggtttcctttccctatcttttgggatttcct |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32630863 |
attagcttgttatcatggggctcaactttgcaaactgctgtggaggtttcctttccctatcttttgggatttcct |
32630789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 32630678 - 32630625
Alignment:
| Q |
377 |
cagtttccacaacaaaacttatgatccctccctactgtatgtatctttactgctt |
431 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
32630678 |
cagtttccacatcaaa-cttatgatccctccctactatatgtatctttgctgctt |
32630625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1577 times since January 2019
Visitors: 3458