View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0507_low_3 (Length: 363)
Name: NF0507_low_3
Description: NF0507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0507_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 94 - 348
Target Start/End: Complemental strand, 38549190 - 38548936
Alignment:
| Q |
94 |
caaagattatccttaaaactttactccctaattaataattctcgtctcatcacttggtgagtgatgctgaacaaattccttgcatgatttgaaggtaatg |
193 |
Q |
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| T |
38549190 |
caaagattatccttaaaactttactccctaattaataattctcgtctcatcacttggtgagtgatgctgaacaaattccttgcatgattagaaggtaatg |
38549091 |
T |
|
| Q |
194 |
tcgttgaaaataattgccgaccatatatgacattagtatatttactatcaactcaatttgcaagcccaaatcctcttgaagttgctttcagccatttgga |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38549090 |
tcgttgaaaataattgccgaccatatatgacattagtatatttactatcaactcaatttgcaagcccaaatcctcttgaagttgctttcagccatttgga |
38548991 |
T |
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| Q |
294 |
gaagcaattaaataattagaccaatgggttaattgtatttgaattacattattac |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38548990 |
gaagcaattaaataattagaccaatgggttaattgtatttgaattacattattac |
38548936 |
T |
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