View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0507_low_5 (Length: 338)
Name: NF0507_low_5
Description: NF0507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0507_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 84 - 331
Target Start/End: Complemental strand, 28640004 - 28639754
Alignment:
| Q |
84 |
gacactgcatatgttccatactcaatagtcatagactaaatgttattttagttt-gcttgaaagaccaattaagaaaaagtgtgtaaaatcctagacaaa |
182 |
Q |
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| T |
28640004 |
gacactgcctatgttccatactcaatagtcatagaccatatgttattttttttttgcttgaaagaccaattaagaaaaagtgtgtaaaatcctagacaaa |
28639905 |
T |
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| Q |
183 |
attggtggtgtactcttactttaaacattaagcattaccccttctaatcaatgatgacattatatgctttggttgttaatatcc--atatttcaattaat |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28639904 |
attggtggtgtactcttactttaaacattaagcattaccccttctaatcaatgatggcattatatgctttggttgttaatatccatatatttcaattaat |
28639805 |
T |
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| Q |
281 |
tttttcggttcttaagttatagttagaggtcatctgtacttagaattatct |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28639804 |
tttttcggttcttaagttatagttagaggtcatctgtacttagaattatct |
28639754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 84 - 290
Target Start/End: Complemental strand, 28649306 - 28649098
Alignment:
| Q |
84 |
gacactgcatatgttccatactcaatagtcatagactaaatgttattttagtttgcttgaaagaccaattaagaaaaagtgtgtaaaatcctagacaaaa |
183 |
Q |
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|||||||| |||| |||||||||| | |||| |||| |||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
28649306 |
gacactgcctatgagccatactcaacaagcataaactatatgttatttttgtttgcttgaaagaccaaataagaaaaagtgtggaaaatcctagacaaat |
28649207 |
T |
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| Q |
184 |
ttggtggtgtactcttactttaaacatta----agcattaccccttctaatcaatgatgacattatatgctttggttgttaatatccatatttcaattaa |
279 |
Q |
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|||||||| |||||||||||| ||||||| ||||||| || |||||||||||||| ||| |||| |||||||||||||||||| |||||| ||||| |
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| T |
28649206 |
ttggtggtatactcttacttttaacattaagcaagcattaaccattctaatcaatgataaca--atattctttggttgttaatatccttatttccattaa |
28649109 |
T |
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| Q |
280 |
ttttttcggtt |
290 |
Q |
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||||||||||| |
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| T |
28649108 |
ttttttcggtt |
28649098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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