View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0507_low_6 (Length: 312)
Name: NF0507_low_6
Description: NF0507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0507_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 2556338 - 2556184
Alignment:
| Q |
72 |
agagacctaaccaattttaagaactcattcagtgccgaaaacgattcaacgatgcttaaatcgagtccttcaactcacattcgagctccgaaatcatcga |
171 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2556338 |
agagacctaaccaattttaagaactcattcagtgccggaaacgattcaacgatgcttaaatcgagtccttcaactcacattcgagctccgaaatcatcga |
2556239 |
T |
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| Q |
172 |
catgcttgcaaaatacacctactacgatgaaaacaatgataatgaggttgagggg |
226 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2556238 |
catgcttccaaaatacacctactacgatgaaaacaatgataatgaggttgagggg |
2556184 |
T |
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