View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0507_low_8 (Length: 256)

Name: NF0507_low_8
Description: NF0507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0507_low_8
NF0507_low_8
[»] chr8 (1 HSPs)
chr8 (54-217)||(6647915-6648076)
[»] chr7 (5 HSPs)
chr7 (122-217)||(4469695-4469789)
chr7 (122-217)||(38691017-38691110)
chr7 (54-192)||(39669515-39669654)
chr7 (54-104)||(4469629-4469679)
chr7 (55-100)||(38690952-38690997)
[»] chr5 (2 HSPs)
chr5 (122-217)||(5254534-5254629)
chr5 (55-104)||(5254645-5254694)
[»] chr2 (2 HSPs)
chr2 (122-217)||(13859644-13859739)
chr2 (54-104)||(13859755-13859805)
[»] chr1 (3 HSPs)
chr1 (122-217)||(20133853-20133947)
chr1 (54-192)||(24523722-24523860)
chr1 (54-104)||(20133787-20133837)
[»] scaffold0136 (1 HSPs)
scaffold0136 (54-192)||(40744-40879)
[»] chr6 (2 HSPs)
chr6 (54-104)||(11144106-11144156)
chr6 (122-217)||(11144177-11144274)
[»] chr3 (1 HSPs)
chr3 (54-217)||(7551419-7551581)
[»] scaffold0416 (1 HSPs)
scaffold0416 (54-104)||(4368-4418)
[»] chr4 (2 HSPs)
chr4 (55-104)||(3993326-3993375)
chr4 (122-152)||(3993395-3993425)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 6648076 - 6647915
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnngttaactatgtttttctaaacaaacttttgcc 153  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||                 |||||||||||||||||||||||||||||||     
T  6648076 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatattttttttagttttt--gttaactatgtttttctaaacaaacttttgct 6647979  T
Q  154 nnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaacacctcatctaacgtttgtct 217  Q
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  6647978 aaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacatcatctaacgtttgtct 6647915  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 4469695 - 4469789
Alignment:
Q  122 gttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaacacctcatctaacgtttgtct 217  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4469695 gttaactatgtttttctaaacaaacttttgc-taaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 4469789  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 38691017 - 38691110
Alignment:
Q  122 gttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaacacctcatctaacgtttgtct 217  Q
    ||||||||||||||||||||||||||||||          |||||||||||||||||||| ||||||||  |||| | ||||||||||||||||||    
T  38691017 gttaactatgtttttctaaacaaacttttgttgaaaaaaattctcattaaatttgtgccaacaaagaaa--aaaaaaactcatctaacgtttgtct 38691110  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 39669654 - 39669515
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccata-nnnnnnnnnnnnnnnnngttaactatgtttttctaaacaaacttttgc 152  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||||                  |||||||||||||||||||||||||||||||    
T  39669654 ggtagtgctattttttctatttatttggcaatataaacaccgatccccatatgatttttttttgtttttgttaactatgtttttctaaacaaacttttgc 39669555  T
Q  153 cnnnnnnnnttctcattaaatttgtgccaccaaagaaaag 192  Q
             |||||||||||||||||||||||||||||||    
T  39669554 taaaaaaaattctcattaaatttgtgccaccaaagaaaag 39669515  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 4469629 - 4469679
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccata 104  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||    
T  4469629 ggtagtgctattttctctatttatttggcaatataaacaccgaaccccata 4469679  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 38690952 - 38690997
Alignment:
Q  55 gtagtgctattttctctatttatttggcaataagaacaccgatccc 100  Q
    |||||| |||||||||||||||||||||||||  | ||||||||||    
T  38690952 gtagtgttattttctctatttatttggcaatataaccaccgatccc 38690997  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 5254629 - 5254534
Alignment:
Q  122 gttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaacacctcatctaacgtttgtct 217  Q
    |||||||||||||||||||| ||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5254629 gttaactatgtttttctaaagaaacttttgctaaaaaaatttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 5254534  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 5254694 - 5254645
Alignment:
Q  55 gtagtgctattttctctatttatttggcaataagaacaccgatccccata 104  Q
    ||||||||||||||||||||||||||| ||||  |||| |||||||||||    
T  5254694 gtagtgctattttctctatttatttggtaatataaacaacgatccccata 5254645  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 13859739 - 13859644
Alignment:
Q  122 gttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaacacctcatctaacgtttgtct 217  Q
    ||||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  13859739 gttaactatgtttttgtaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatataacgtttgtct 13859644  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 13859805 - 13859755
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccata 104  Q
    |||||||||||||||| ||||||||||||||||  ||||| ||||||||||    
T  13859805 ggtagtgctattttctatatttatttggcaatataaacactgatccccata 13859755  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 20133853 - 20133947
Alignment:
Q  122 gttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaacacctcatctaacgtttgtct 217  Q
    |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  20133853 gttaactatgtttttctaaacaaacttttgctaaaaaaatttctcattaaatttgtgccaccaaagaaaa-aaaaaacctcatctaacgtttgtct 20133947  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 24523722 - 24523860
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnngttaactatgtttttctaaacaaacttttgcc 153  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||                 |||||||||||||||||||||||||||||||     
T  24523722 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatatgtttttttttgtttttgttaactatgtttttctaaacaaacttttgct 24523821  T
Q  154 nnnnnnnnttctcattaaatttgtgccaccaaagaaaag 192  Q
            |||||||||||||||||||||||||||||||    
T  24523822 aaaaaagattctcattaaatttgtgccaccaaagaaaag 24523860  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 20133787 - 20133837
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccata 104  Q
    |||||||||||||||||||||||||||| ||||  | ||||||||||||||    
T  20133787 ggtagtgctattttctctatttatttggaaatataatcaccgatccccata 20133837  T

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Target: scaffold0136 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 40744 - 40879
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnngttaactatgtttttctaaacaaacttttgcc 153  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| ||||                 |||||||||||||||||||||||||||||||     
T  40744 ggtagtgctattttctctatttatttggcaatataaacaccgatcctcata---ttttatttttttttgttaactatgtttttctaaacaaacttttgct 40840  T
Q  154 nnnnnnnnttctcattaaatttgtgccaccaaagaaaag 192  Q
            |||||||||||||||||||||||||||||||    
T  40841 aaaaaaaattctcattaaatttgtgccaccaaagaaaag 40879  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 11144106 - 11144156
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccata 104  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  11144106 ggtagtgctattttctctatttatttggcaatataaacaccgatccccata 11144156  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 11144177 - 11144274
Alignment:
Q  122 gttaactatgtttttctaaacaaacttttgccnnnnnnnn--ttctcattaaatttgtgccaccaaagaaaagaaaacacctcatctaacgtttgtct 217  Q
    |||||||||||||||||||||||||||||||           |||||||||||||| | |||| ||||||||||||| | ||||||||||||||||||    
T  11144177 gttaactatgtttttctaaacaaacttttgcaaaaaaaaaaattctcattaaatttataccactaaagaaaagaaaaaatctcatctaacgtttgtct 11144274  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 7551581 - 7551419
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnngttaactatgtttttctaaacaaacttttgcc 153  Q
    ||||||| |||||||||||||||||||||||||  | ||||||||||||||                 ||||||||||||||||||||||||||||||||    
T  7551581 ggtagtgttattttctctatttatttggcaatataaccaccgatccccata-tgttttttttgtttttgttaactatgtttttctaaacaaacttttgcc 7551483  T
Q  154 --nnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaacacctcatctaacgtttgtct 217  Q
              |||||||||||||||||||| ||||||||| |||| |  |||||||||||||||||    
T  7551482 aaaaaaaaaattctcattaaatttgtgccaacaaagaaaaaaaaata--tcatctaacgtttgtct 7551419  T

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Target: scaffold0416 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 4368 - 4418
Alignment:
Q  54 ggtagtgctattttctctatttatttggcaataagaacaccgatccccata 104  Q
    ||||||| |||||||||||||||||||||||||  | ||||||||||||||    
T  4368 ggtagtgttattttctctatttatttggcaatataaccaccgatccccata 4418  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 3993326 - 3993375
Alignment:
Q  55 gtagtgctattttctctatttatttggcaataagaacaccgatccccata 104  Q
    |||| |||||||||||||||||||| ||||||  ||||||||||||||||    
T  3993326 gtagcgctattttctctatttatttagcaatataaacaccgatccccata 3993375  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 3993395 - 3993425
Alignment:
Q  122 gttaactatgtttttctaaacaaacttttgc 152  Q
    |||||||||||||||||||||||||||||||    
T  3993395 gttaactatgtttttctaaacaaacttttgc 3993425  T

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