View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0508_low_1 (Length: 468)

Name: NF0508_low_1
Description: NF0508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0508_low_1
NF0508_low_1
[»] chr8 (5 HSPs)
chr8 (30-451)||(1768888-1769313)
chr8 (41-195)||(1801580-1801734)
chr8 (41-196)||(1784770-1784925)
chr8 (46-195)||(1777541-1777690)
chr8 (41-189)||(1772570-1772718)
[»] chr3 (2 HSPs)
chr3 (41-195)||(25727524-25727678)
chr3 (291-375)||(35558883-35558962)
[»] chr5 (2 HSPs)
chr5 (65-128)||(6807571-6807634)
chr5 (65-128)||(6814356-6814419)
[»] chr7 (1 HSPs)
chr7 (288-341)||(8633778-8633832)
[»] chr1 (2 HSPs)
chr1 (288-350)||(38902172-38902233)
chr1 (288-340)||(4552219-4552271)
[»] chr6 (1 HSPs)
chr6 (294-369)||(15064578-15064654)


Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Original strand, 1768888 - 1769313
Alignment:
Q  30 gatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1768888 gatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttag 1768987  T
Q  130 atcagttgcaaccttataccaacaccatgcaccatggatacctccatgaatcaacacaaagtgcttttcctgtttgaacatcttcaaaatcaatgatagt 229  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1768988 atcagttgcaaccttataccaacaccatgcaccatggatgcctccatgaatcaacacaaagtgcttttcctgtttgaacatcttcaaaatcaatgatagt 1769087  T
Q  230 ctttcttgtctatgaaaactacaaatttatatactacatatgaaactagtcttctttcttgtttaagcatctaaaactaataacttttaccttgaaaatt 329  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1769088 ctttcttgtctatgaaaactgcaaatttatatactacatatgaaactagtcttctttcttgtttaagcatctaaaactaataacttttacattgaaaatt 1769187  T
Q  330 gtgaagttatgattttgatatgcttgacctctattttcaagataaatttcta-----gggttacttaaataatgcctcccttagggctttttattttaaa 424  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||     |||||||||||| |||||| |||||||||||||||||||||||    
T  1769188 gtgaagttatgattttgatatgtttgacctctattttcaagataaatttctatttatgggttacttaaacaatgcc-cccttagggctttttattttaaa 1769286  T
Q  425 aaatatgtttagcatctctattactcc 451  Q
    |||||||||||||||||||||||||||    
T  1769287 aaatatgtttagcatctctattactcc 1769313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 1801580 - 1801734
Alignment:
Q  41 gaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaa 140  Q
    ||||||||||||| |||||| | |||  ||||| || ||||||||||||||| ||| |  | ||| || |||||||||||| |||| ||   ||||||||    
T  1801580 gaaattgaatgaatctcttgaacctggattggactgataccacaagcagccaagtcaatagttgtaacattatgaccagctaatttaagcatagttgcaa 1801679  T
Q  141 ccttataccaacaccatgcaccatggatacctccatgaatcaacacaaagtgctt 195  Q
    ||||||||||||||||||||||||||| | |||||||||  | ||||||||||||    
T  1801680 ccttataccaacaccatgcaccatggaaagctccatgaacaagcacaaagtgctt 1801734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 1784770 - 1784925
Alignment:
Q  41 gaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaa 140  Q
    ||||||||||||| |||||| |  ||  |||||||| ||||  ||||||||||||| |  | ||| || ||||||||||||||||| ||   ||||||||    
T  1784770 gaaattgaatgaatctcttgaacttgtattggattgatacctgaagcagccatgtcaatagttgtaacattatgaccagctgatttaagcatagttgcaa 1784869  T
Q  141 ccttataccaacaccatgcaccatggatacctccatgaatcaacacaaagtgcttt 196  Q
    ||||||||||||||||| ||||||||  | |||||||||  | |||||||||||||    
T  1784870 ccttataccaacaccattcaccatggccagctccatgaacaagcacaaagtgcttt 1784925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 195
Target Start/End: Original strand, 1777541 - 1777690
Alignment:
Q  46 tgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaacctta 145  Q
    |||||||| |||||| | |||  ||||| || |||||||||||||||  || | ||  || || ||||||||||||||||| |     ||||||||||||    
T  1777541 tgaatgaatctcttgaacctgtattggactgataccacaagcagccaattcaattgtggtaacattatgaccagctgatttcaacatggttgcaacctta 1777640  T
Q  146 taccaacaccatgcaccatggatacctccatgaatcaacacaaagtgctt 195  Q
    |||||||||||||||||||||  | |||||||||  | ||||||||||||    
T  1777641 taccaacaccatgcaccatggccagctccatgaacaagcacaaagtgctt 1777690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 1772570 - 1772718
Alignment:
Q  41 gaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaa 140  Q
    ||||||||||||| |||||| |  ||  |||||||| ||||  |||||||||  || |  | ||| || ||||||||||||||||| ||   |||| | |    
T  1772570 gaaattgaatgaatctcttggacttgtattggattgatacctgaagcagccaattcaatagttgtaacattatgaccagctgatttaagcatagttacca 1772669  T
Q  141 ccttataccaacaccatgcaccatggatacctccatgaatcaacacaaa 189  Q
    |||||||||||||||||||||||||| | || |||||||||| ||||||    
T  1772670 ccttataccaacaccatgcaccatggcttccaccatgaatcagcacaaa 1772718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 25727678 - 25727524
Alignment:
Q  41 gaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaa 140  Q
    ||||||||||||| |||||| | |||  ||||| || |||||||| ||||||  || |  | ||| || ||||||||||||||||| ||   ||||||||    
T  25727678 gaaattgaatgaatctcttgaacctgtattggactgataccacaaccagccaattcaatagttgtaacattatgaccagctgatttcagcatagttgcaa 25727579  T
Q  141 ccttataccaacaccatgcaccatggatacctccatgaatcaacacaaagtgctt 195  Q
    ||||||||||| ||||||||||||||| |  ||||||||  | ||||||||||||    
T  25727578 ccttataccaagaccatgcaccatggaaaggtccatgaacaagcacaaagtgctt 25727524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 35558962 - 35558883
Alignment:
Q  291 tttaagcatctaaaactaataacttttaccttgaaaattgtgaagttatgattttgatatgcttgacctctattttcaagataaa 375  Q
    ||||||||||||||| ||||||||||||| || ||||||     || |||||||| ||||| ||||| | |||||||||||||||    
T  35558962 tttaagcatctaaaattaataacttttacgttaaaaatt-----gtcatgatttttatatgtttgacttgtattttcaagataaa 35558883  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 6807571 - 6807634
Alignment:
Q  65 tgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgatttta 128  Q
    |||||||||| | | ||| |||||||||||||||||||||||||||  || ||||| |||||||    
T  6807571 tgctttggatggattccagaagcagccatgtctagtgctgtgacttcgtgtccagcagatttta 6807634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 6814356 - 6814419
Alignment:
Q  65 tgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgatttta 128  Q
    |||||||||| | | ||| |||||||||||||||||||||||||||  || ||||| |||||||    
T  6814356 tgctttggatggattccagaagcagccatgtctagtgctgtgacttcgtgtccagcagatttta 6814419  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 8633778 - 8633832
Alignment:
Q  288 ttgtttaagcatctaaaactaa-taacttttaccttgaaaattgtgaagttatga 341  Q
    |||||||||||||||||| | | ||| ||||||||||||||||||| ||||||||    
T  8633778 ttgtttaagcatctaaaatttagtaagttttaccttgaaaattgtgtagttatga 8633832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 38902172 - 38902233
Alignment:
Q  288 ttgtttaagcatctaaaactaataacttttaccttgaaaattgtgaagttatgattttgatat 350  Q
    |||||||||||||||||| |||| |||||||| |||||||||||| | |||||| ||| ||||    
T  38902172 ttgtttaagcatctaaaaataat-acttttacattgaaaattgtgtaattatgacttttatat 38902233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 4552271 - 4552219
Alignment:
Q  288 ttgtttaagcatctaaaactaataacttttaccttgaaaattgtgaagttatg 340  Q
    |||||||||||||||||| || ||| | |||| |||||||||||| |||||||    
T  4552271 ttgtttaagcatctaaaaatagtaattattacgttgaaaattgtgtagttatg 4552219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 15064654 - 15064578
Alignment:
Q  294 aagcatctaaaactaataacttttaccttgaaaattgtgaagttatgatttt-gatatgcttgacctctattttcaa 369  Q
    |||||||||||| || |||||||||  |||||||||||| | ||||||||||  ||||| ||||| | |||||||||    
T  15064654 aagcatctaaaagtagtaacttttatattgaaaattgtgtatttatgattttacatatgtttgacttgtattttcaa 15064578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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