View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0509_high_1 (Length: 355)
Name: NF0509_high_1
Description: NF0509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0509_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 30 - 355
Target Start/End: Complemental strand, 30346716 - 30346391
Alignment:
| Q |
30 |
atagcctccatcaaagtaagatcaagcccttgcggcctaagtgttggattgacgaaaatgtcaatagcattataaaatgctttcaacatggaaggactca |
129 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346716 |
atagcctccatcaaagtaagatcaagcccttgtggcctaagtgttggattgacgaaaatgtcaatagcattataaaatgctttcaacatggaaggactca |
30346617 |
T |
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| Q |
130 |
ttgttcctagaacaagaacttggtttcctaaatccttgtacctgttcccccatggtccagaaccagcaataatcaaataaacattagggtgttttgttat |
229 |
Q |
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| T |
30346616 |
ttgatcctagaacaagaacttggtttcctaaatccttgtacctgttcccccatggtccagaaccagcaataatcaaataaacattagggtgttttgttat |
30346517 |
T |
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| Q |
230 |
tagctttgaatacgcttcatgaagcaaaggatgacctttgtctttaactaatctccctgctacaccaagtactaaacttgcattgcttggaatcccaatt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346516 |
tagctttgaatacgcttcatgaagcaaaggatgacctttgtctttaactaatctccctgctacaccaagtactaaacttgcattgcttggaatcccaatt |
30346417 |
T |
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| Q |
330 |
ttggttctaaatttccttcccaattc |
355 |
Q |
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| T |
30346416 |
ttggttctaaatttccttcccaattc |
30346391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 30 - 340
Target Start/End: Original strand, 10840926 - 10841236
Alignment:
| Q |
30 |
atagcctccatcaaagtaagatcaagcccttgcggcctaagtgttggattgacgaaaatgtcaatagcattataaaatgctttcaacatggaaggactca |
129 |
Q |
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||||||||||||| ||||||||||| ||||| || || | ||| ||||| || ||||| |||||||||||||| |||||| | ||||| |||||| ||| |
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| T |
10840926 |
atagcctccatcagtgtaagatcaagtccttgtggtcttaatgtaggattaacaaaaatatcaatagcattatagaatgctcttaacatagaaggattca |
10841025 |
T |
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| Q |
130 |
ttgttcctagaacaagaacttggtttcctaaatccttgtacctgttcccccatggtccagaaccagcaataatcaaataaacattagggtgttttgttat |
229 |
Q |
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||| ||| ||||||||||||||||| || | |||||| ||||| ||| ||||||||||||||||||| | ||||||||| ||||| | || |||||||| |
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| T |
10841026 |
ttgatccaagaacaagaacttggttcccgatatccttatacctattctcccatggtccagaaccagctacaatcaaatacacattggtgtactttgttat |
10841125 |
T |
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| Q |
230 |
tagctttgaatacgcttcatgaagcaaaggatgacctttgtctttaactaatctccctgctacaccaagtactaaacttgcattgcttggaatcccaatt |
329 |
Q |
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||| ||||| | ||||||||||| || ||||||||||| || || |||||||| || ||||| |||| ||||||||| ||||| ||||||||||||||| |
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| T |
10841126 |
aagccttgaaaatgcttcatgaagtaatggatgacctttatcctttactaatcttccagctactccaaatactaaactagcattacttggaatcccaatt |
10841225 |
T |
|
| Q |
330 |
ttggttctaaa |
340 |
Q |
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||||||||||| |
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| T |
10841226 |
ttggttctaaa |
10841236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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