View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0509_high_4 (Length: 254)
Name: NF0509_high_4
Description: NF0509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0509_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 43576500 - 43576284
Alignment:
| Q |
14 |
aggttcagggttagaggatagagataaagcaaagtgtttgtgtgcagaagagagttgttgataagacaagtatgaggatataggatacttacaagattca |
113 |
Q |
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| T |
43576500 |
aggttcagggttagaggatagagataaagcaaagtgtttgtgtgcagaagagagttgttgataagacaagtatgaggatataggatacttacaagattca |
43576401 |
T |
|
| Q |
114 |
gccgatgatgatggagcaggaagagatgtaggatgaattgtattggtgagtaaattacaatgatatgcttctagatatgcaggtggtttgtgaagtctag |
213 |
Q |
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| T |
43576400 |
acagatgatgatggagcaggaagagatgtaggatgaattgtattggtgagtaaattacaatgatatgcttctagatatgcaggtggtttgtgaagtctag |
43576301 |
T |
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| Q |
214 |
aagactttcttatgatg |
230 |
Q |
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|||||||||| |||||| |
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| T |
43576300 |
aagactttctgatgatg |
43576284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 42125982 - 42125763
Alignment:
| Q |
14 |
aggttcagggttagaggatagagataaagcaaagtgtttgtgtgcagaagagagttgttgataagacaagtatgaggatataggatacttacaagattca |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
42125982 |
aggttcagggttaaaggatagagataaagcaaagtgtttgtgtgcataagagagttgttgataagacaagtatgaagatatatgatacttacaagattca |
42125883 |
T |
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| Q |
114 |
gc---cgatgatgatggagcaggaagagatgtaggatgaattgtattggtgagtaaattacaatgatatgcttctagatatgcaggtggtttgtgaagtc |
210 |
Q |
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| T |
42125882 |
acatatgatgatgatgaagcaggaagagatgtaggatgaattgtattggtgagtaaattataatgatatgcttctagatatgcaggtggtttgtgaagtc |
42125783 |
T |
|
| Q |
211 |
tagaagactttcttatgatg |
230 |
Q |
| |
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| T |
42125782 |
tataagactttctgatgatg |
42125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 15295854 - 15295645
Alignment:
| Q |
14 |
aggttcagggttagaggatagagataaagcaaagtgtttgtgtgcagaagagagttgttgataagacaagtatgaggatataggatacttacaagattca |
113 |
Q |
| |
|
||||| ||||||||| |||| ||||||| ||||||| || |||||||||||| || |||||||||||| |||| |||| ||| ||||||||||||||| |
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| T |
15295854 |
aggtttagggttagatgataaggataaagtgaagtgttggtatgcagaagagagatgctgataagacaagcatgaagataaagggtacttacaagattca |
15295755 |
T |
|
| Q |
114 |
gccgatgatgatggagcaggaagagatgtaggatgaattgtattggtgagtaaattacaatgatatgcttctagatatgcaggtggtttgtgaagtctag |
213 |
Q |
| |
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|| |||||||||| |||||||||| ||| |||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||| |||| ||||| |
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| T |
15295754 |
gcagatgatgatgaagcaggaagaaatggaggatgaattgtattgttgagcaaattgcaatgatatgcttctagctatgcaggtggtttatgaattctag |
15295655 |
T |
|
| Q |
214 |
aagactttct |
223 |
Q |
| |
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|||||||| |
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|
| T |
15295654 |
ctgactttct |
15295645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 15476223 - 15476014
Alignment:
| Q |
14 |
aggttcagggttagaggatagagataaagcaaagtgtttgtgtgcagaagagagttgttgataagacaagtatgaggatataggatacttacaagattca |
113 |
Q |
| |
|
||||| ||||||||| |||| ||||||| ||||||| || |||||||||||| || |||||||||||| |||| |||| ||| ||||||||||||||| |
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| T |
15476223 |
aggtttagggttagatgataaggataaagtgaagtgttggtatgcagaagagagatgctgataagacaagcatgaagataaagggtacttacaagattca |
15476124 |
T |
|
| Q |
114 |
gccgatgatgatggagcaggaagagatgtaggatgaattgtattggtgagtaaattacaatgatatgcttctagatatgcaggtggtttgtgaagtctag |
213 |
Q |
| |
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|| |||||||||| |||||||||| ||| |||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||| |||| ||||| |
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| T |
15476123 |
gcagatgatgatgaagcaggaagaaatggaggatgaattgtattgttgagcaaattgcaatgatatgcttctagctatgcaggtggtttatgaattctag |
15476024 |
T |
|
| Q |
214 |
aagactttct |
223 |
Q |
| |
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|||||||| |
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|
| T |
15476023 |
ctgactttct |
15476014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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