View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0509_low_3 (Length: 339)

Name: NF0509_low_3
Description: NF0509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0509_low_3
NF0509_low_3
[»] chr3 (1 HSPs)
chr3 (108-328)||(2688309-2688529)
[»] chr5 (3 HSPs)
chr5 (219-326)||(367532-367639)
chr5 (190-220)||(38187239-38187269)
chr5 (190-220)||(38211088-38211118)
[»] chr4 (2 HSPs)
chr4 (219-322)||(6738643-6738746)
chr4 (112-142)||(1704013-1704043)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 108 - 328
Target Start/End: Original strand, 2688309 - 2688529
Alignment:
Q  108 atgaaactactagcatcagttccagctgctcttcagcaaatttctggattggctattgcatattgctactttatcttgtaagtttctttagataatcata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2688309 atgaaactactagcatcagttccagctgctcttcagcaaatttctggattggctattgcatattgctactttatcttgtaagtttctttagataatcata 2688408  T
Q  208 gttgaaaaggtacctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttattc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2688409 gttgaaaaggtacctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttatta 2688508  T
Q  308 tagagtgttaattcatctcat 328  Q
    |||||||||||||||||||||    
T  2688509 tagagtgttaattcatctcat 2688529  T

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Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 367639 - 367532
Alignment:
Q  219 acctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa 318  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  367639 acctaattttgttcatttatatcctttgtcatgcattacttttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa 367540  T
Q  319 ttcatctc 326  Q
    ||||||||    
T  367539 ttcatctc 367532  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 220
Target Start/End: Complemental strand, 38187269 - 38187239
Alignment:
Q  190 tttctttagataatcatagttgaaaaggtac 220  Q
    |||||||||||||||||||||||||||||||    
T  38187269 tttctttagataatcatagttgaaaaggtac 38187239  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 220
Target Start/End: Original strand, 38211088 - 38211118
Alignment:
Q  190 tttctttagataatcatagttgaaaaggtac 220  Q
    |||||||||||||||||||||||||||||||    
T  38211088 tttctttagataatcatagttgaaaaggtac 38211118  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 6738643 - 6738746
Alignment:
Q  219 acctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa 318  Q
    |||||| ||||||||||| | ||||||||||||||||  ||||||||||||||||||||   ||||||||||||||| ||||||||||||| || |||||    
T  6738643 acctaaatttgttcatttatgtcctttgtcatgccttgttgttctagaattttaattcaagtatacattattgtttagtacatttattctaaagggttaa 6738742  T
Q  319 ttca 322  Q
    ||||    
T  6738743 ttca 6738746  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 142
Target Start/End: Original strand, 1704013 - 1704043
Alignment:
Q  112 aactactagcatcagttccagctgctcttca 142  Q
    |||||||||||||||||||||||||||||||    
T  1704013 aactactagcatcagttccagctgctcttca 1704043  T

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