View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0509_low_4 (Length: 331)
Name: NF0509_low_4
Description: NF0509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0509_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 30 - 328
Target Start/End: Original strand, 40587989 - 40588287
Alignment:
| Q |
30 |
ccactaaccaattttttaatctccatcaccatatgttcaacagaacaatagtagttccttttttgttcacagtaacttgaccaaaattcaaacaaccatt |
129 |
Q |
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| T |
40587989 |
ccactaaccaattttttaatctccatcaccatatgttcaacagaacaatagtagttccttttttgttcacagtaacttgaccaaaactcaaacaaccatt |
40588088 |
T |
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| Q |
130 |
ttaaatcacctaaataaagaataacccctcttcccatatagcttttcacaaggcttctaacttccacaaatttcttttcaacttcctctttactaatatt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40588089 |
ttaaatcacctaaataaagaataacccctcttcccatatagcttttcacaaggcttctaacttccacaaatttcttttcaacttcctctttactaatatt |
40588188 |
T |
|
| Q |
230 |
cctaaaacatattagaggaagactcacaaattgtacataccttaactccataggaacattacctatctcaaacctttccatcactccctatgctactcc |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
40588189 |
cctaaaacatattagaggaagactcacaaattgtacataccttaactccataggaacatcacctatctcaaacctttccatcactcccttagctactcc |
40588287 |
T |
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