View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0509_low_5 (Length: 304)
Name: NF0509_low_5
Description: NF0509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0509_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 15646439 - 15646636
Alignment:
| Q |
12 |
gaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccactttta |
111 |
Q |
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| T |
15646439 |
gaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctattaacattttta |
15646538 |
T |
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| Q |
112 |
aggctaagtctgtaattggagaaaattatattgatcaatatttctgcaaatgagaagttctggaaatatcctttgttatctatggtggactgatgatg |
209 |
Q |
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| T |
15646539 |
aggctaagtctgcaattggagaaaattatattgatcaatatttctgcaaatgagaagttgtggaaatatcctttgttatctatggtggactgatgatg |
15646636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 15655591 - 15655760
Alignment:
| Q |
12 |
gaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccactttta |
111 |
Q |
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| T |
15655591 |
gaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctattagcattttta |
15655690 |
T |
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| Q |
112 |
aggctaagtctgtaattggagaaaattatattgatcaatatttctgcaaatgagaagttctggaaatatc |
181 |
Q |
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| T |
15655691 |
aggctaagtctgcaattggagaaaattatatcgatcaatatttttgcaaatgagaaaatctggaaatatc |
15655760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 15626047 - 15626230
Alignment:
| Q |
18 |
aaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccacttttaaggcta |
117 |
Q |
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| T |
15626047 |
aaaggcaatccattttgagccaagatatgcaaagctgtctcttcattcacatcacgtgcaaaagctagtgcatttctatctcttaccatttttaaggcta |
15626146 |
T |
|
| Q |
118 |
agtctgtaattggagaaaattatattgatcaatatttctgcaaatgagaagttctggaaatatcctttgttatctatggtggac |
201 |
Q |
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| T |
15626147 |
agtctgcaattggagaaaattatattgatcaatatttttgcaaataagaagttatgtaaatattccatgttgtccatggtggac |
15626230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 15494780 - 15494951
Alignment:
| Q |
11 |
agaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccactttt |
110 |
Q |
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| T |
15494780 |
agaatccaatggcatttgattttgagccaagagatgcaaagctgtctcttcattcacatcacgtgcaaaagcaagtgcatttctgcctcttgccattttc |
15494879 |
T |
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| Q |
111 |
aaggctaagtctgtaattggagaaaattatattgatcaatatttctgcaaatgagaagttctggaaatatcc |
182 |
Q |
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| T |
15494880 |
aaggccaagtctgcaattgggaaaaaatattatgatcaatatttttgcaattgcaaagttcttgaaatatcc |
15494951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 15607844 - 15607999
Alignment:
| Q |
23 |
cattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccacttttaaggctaagtct |
122 |
Q |
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|||| ||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||| ||||| ||| |||||| || |||||| |
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| T |
15607844 |
cattagatttcgagccaagagatgcaaagctgtctcttcatttacatcacgtacaaaagctagttcattcctatctcttgccaattttaatgcaaagtct |
15607943 |
T |
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| Q |
123 |
gtaattgg-agaaaattatattgatcaatatttctgcaaatgagaagttctggaaa |
177 |
Q |
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| T |
15607944 |
gcaattggaagaaaaatattatgatcaatatttttgtaattgcgaagttgtggaaa |
15607999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 15535249 - 15535367
Alignment:
| Q |
11 |
agaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccactttt |
110 |
Q |
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||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||| |||| | ||| | ||||| ||| ||| |
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| T |
15535249 |
agaatccaatggcatttgatcttgagccaagagatgcaaagctgtttctttattcacatcgcgtgcaaaagatagttctttcttgtctcttgccattttg |
15535348 |
T |
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| Q |
111 |
aaggctaagtctgtaattg |
129 |
Q |
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||||| ||||||| ||||| |
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| T |
15535349 |
aaggccaagtctgcaattg |
15535367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 15518431 - 15518549
Alignment:
| Q |
11 |
agaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccactttt |
110 |
Q |
| |
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||||||||| |||||| |||||| |||||||||||| |||||||| | || |||| |||||||||||||||||||| | ||| | ||||||||| ||| |
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| T |
15518431 |
agaatccaatggcatttgatttttagccaagagatgtaaagctgttttttcattctcatcacgtgcaaaagctagttctttcttgtctcttaccattttg |
15518530 |
T |
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| Q |
111 |
aaggctaagtctgtaattg |
129 |
Q |
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||||| ||||||| ||||| |
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| T |
15518531 |
aaggccaagtctgcaattg |
15518549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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