View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0509_low_6 (Length: 294)
Name: NF0509_low_6
Description: NF0509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0509_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 43602040 - 43601883
Alignment:
| Q |
72 |
ctggttaagttaagtggataacaattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcaga |
171 |
Q |
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| T |
43602040 |
ctggttaagttaagtggataacgattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcaga |
43601941 |
T |
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| Q |
172 |
gacaactttatcatgtgcggggctgtgttttggtgcagaaataattttcataatttga |
229 |
Q |
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| T |
43601940 |
gacaactttatcatgtgcggggctgtgttttggtgcagaaataattttcataatttga |
43601883 |
T |
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Back To:
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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 22436220 - 22436329
Alignment:
| Q |
118 |
cacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataatt |
217 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |||||| ||| | |||| ||||||||||||||||||| | ||||||||||||||||| ||| |
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| T |
22436220 |
cacgtgatgcatgtgacagaccgcaaattattgtcaattggaaccgttataagaggcaactttatcatgtgcgggagtatgttttggtgcagaaatcatt |
22436319 |
T |
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| Q |
218 |
ttcataattt |
227 |
Q |
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|||||||||| |
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| T |
22436320 |
ttcataattt |
22436329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 22239084 - 22239124
Alignment:
| Q |
187 |
tgcggggctgtgttttggtgcagaaataattttcataattt |
227 |
Q |
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| T |
22239084 |
tgcgggactgtgttttggtgcagaaataattttcataattt |
22239124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 37560602 - 37560642
Alignment:
| Q |
187 |
tgcggggctgtgttttggtgcagaaataattttcataattt |
227 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
37560602 |
tgcgggactgtgttttggtgcagaaataattttcataattt |
37560642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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