View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0510_low_1 (Length: 386)

Name: NF0510_low_1
Description: NF0510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0510_low_1
NF0510_low_1
[»] chr2 (3 HSPs)
chr2 (95-345)||(34761119-34761369)
chr2 (281-340)||(6592996-6593055)
chr2 (292-329)||(2609080-2609117)
[»] chr3 (7 HSPs)
chr3 (283-337)||(4474334-4474388)
chr3 (293-336)||(27178143-27178186)
chr3 (288-338)||(14349374-14349424)
chr3 (293-337)||(14340736-14340780)
chr3 (249-289)||(14748187-14748227)
chr3 (289-337)||(43747278-43747326)
chr3 (293-337)||(48348258-48348302)
[»] chr5 (6 HSPs)
chr5 (249-289)||(683440-683480)
chr5 (289-337)||(43098027-43098075)
chr5 (280-338)||(20629726-20629784)
chr5 (295-345)||(26702672-26702722)
chr5 (295-345)||(26972405-26972455)
chr5 (289-337)||(3999085-3999133)
[»] chr7 (7 HSPs)
chr7 (291-345)||(23746153-23746207)
chr7 (301-337)||(44312756-44312792)
chr7 (293-340)||(8074139-8074186)
chr7 (287-337)||(18186436-18186486)
chr7 (248-289)||(28117699-28117740)
chr7 (293-337)||(20185182-20185226)
chr7 (293-337)||(29834179-29834223)
[»] scaffold0248 (1 HSPs)
scaffold0248 (296-337)||(677-718)
[»] scaffold0194 (1 HSPs)
scaffold0194 (292-337)||(24895-24940)
[»] chr1 (8 HSPs)
chr1 (284-337)||(23220828-23220881)
chr1 (285-329)||(8009990-8010034)
chr1 (142-193)||(6556467-6556518)
chr1 (289-340)||(16545826-16545877)
chr1 (300-337)||(27864184-27864221)
chr1 (248-289)||(40923701-40923742)
chr1 (293-329)||(17760966-17761002)
chr1 (293-337)||(18632606-18632650)
[»] chr8 (3 HSPs)
chr8 (301-337)||(20228242-20228278)
chr8 (287-340)||(25144204-25144257)
chr8 (289-337)||(37263357-37263405)
[»] chr4 (4 HSPs)
chr4 (286-329)||(51362815-51362858)
chr4 (247-279)||(1074461-1074493)
chr4 (293-337)||(2653956-2654000)
chr4 (289-337)||(3658191-3658239)
[»] chr6 (1 HSPs)
chr6 (293-343)||(33401314-33401364)
[»] scaffold0417 (1 HSPs)
scaffold0417 (288-337)||(9604-9653)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 95 - 345
Target Start/End: Complemental strand, 34761369 - 34761119
Alignment:
Q  95 cagttccctgttttgaataatattagtcgactagacaagtacaatcaccaaattagtcgttaactttgtagcaccctctcaaatagacccttgagattaa 194  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||||||| |    
T  34761369 cagttccctgttttgaataatattagtcgactaaacaagtacaatcaccaaattagtcgttgactttgtagtaagctctcaaatagacccttgagattga 34761270  T
Q  195 tatttcaaaaagattccctattctattaaactgtacggttgatcctattattcctatatttaaccacttattatcaattaagtccatatattttaggttt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  34761269 tatttcaaaaagattccctattctattaaactgtacggttgatccaattattcctatatttaaccacttactatcaattaaggccatatattttaggttt 34761170  T
Q  295 aatagtagttttcgtctcctaacttttacgaagttacgattttagctcctt 345  Q
    ||||| |||||||||| ||||||||| |||||||| |||||||| ||||||    
T  34761169 aatagcagttttcgtcccctaactttcacgaagttgcgattttaactcctt 34761119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 6593055 - 6592996
Alignment:
Q  281 tatattttaggtttaatagtagttttcgtctcctaacttttacgaagttacgattttagc 340  Q
    ||||||||||| |||| ||||||||||| | ||||||||| |||||||| ||||||||||    
T  6593055 tatattttaggcttaacagtagttttcgccacctaactttcacgaagttgcgattttagc 6592996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 2609080 - 2609117
Alignment:
Q  292 tttaatagtagttttcgtctcctaacttttacgaagtt 329  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  2609080 tttaatagtagttttcgccccctaacttttacgaagtt 2609117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 4474388 - 4474334
Alignment:
Q  283 tattttaggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||| |||||||    
T  4474388 tattttaggtttaatagcagttttctcctcctaacttttacgaagttgcgatttt 4474334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 27178143 - 27178186
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagttacgattt 336  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||    
T  27178143 ttaatagcagttttcgtcccctaacttttacgaagttgcgattt 27178186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 14349424 - 14349374
Alignment:
Q  288 taggtttaatagtagttttcgtctcctaacttttacgaagttacgatttta 338  Q
    |||| ||||||| |||||||| | |||||||||||||||||| ||||||||    
T  14349424 taggcttaatagcagttttcgccccctaacttttacgaagttgcgatttta 14349374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 14340736 - 14340780
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||| |||||||| | ||||||||| ||||||||||||||||    
T  14340736 ttaataggagttttcgccccctaactttcacgaagttacgatttt 14340780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 14748187 - 14748227
Alignment:
Q  249 tatatttaaccacttattatcaattaagtccatatatttta 289  Q
    |||||||||||||||||| |||||||||||  |||||||||    
T  14748187 tatatttaaccacttattttcaattaagtctctatatttta 14748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 43747278 - 43747326
Alignment:
Q  289 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||||||| ||||||||||   |||||||||||||||| |||||||    
T  43747278 aggtttaatagcagttttcgtcctataacttttacgaagttgcgatttt 43747326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 48348258 - 48348302
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||| |||||||| | |||||||||||||||||| |||||||    
T  48348258 ttaatagcagttttcgccccctaacttttacgaagttgcgatttt 48348302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 683440 - 683480
Alignment:
Q  249 tatatttaaccacttattatcaattaagtccatatatttta 289  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  683440 tatatttaaccacttattatcaattaagtccttatatttta 683480  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 43098027 - 43098075
Alignment:
Q  289 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  43098027 aggtttaatagcagttttcgtcccctaacttttacgaagttgcgatttt 43098075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 20629726 - 20629784
Alignment:
Q  280 atatattttaggtttaatagtagttttcgtctcctaacttttacgaagttacgatttta 338  Q
    |||||||||||||||||||| |||||||| | | ||||||| || ||||| ||||||||    
T  20629726 atatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttta 20629784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 26702722 - 26702672
Alignment:
Q  295 aatagtagttttcgtctcctaacttttacgaagttacgattttagctcctt 345  Q
    ||||||| |||| ||| |||||||||||||||||| ||||||| |||||||    
T  26702722 aatagtaatttttgtcccctaacttttacgaagttgcgattttggctcctt 26702672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 26972455 - 26972405
Alignment:
Q  295 aatagtagttttcgtctcctaacttttacgaagttacgattttagctcctt 345  Q
    ||||||| |||| ||| |||||||||||||||||| ||||||| |||||||    
T  26972455 aatagtaatttttgtcccctaacttttacgaagttgcgattttggctcctt 26972405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 3999085 - 3999133
Alignment:
Q  289 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||||||| |||||||| | ||||||||| |||||||| |||||||    
T  3999085 aggtttaatagcagttttcgccccctaactttcacgaagttgcgatttt 3999133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 23746207 - 23746153
Alignment:
Q  291 gtttaatagtagttttcgtctcctaacttttacgaagttacgattttagctcctt 345  Q
    ||||||||| || ||||||| |||||||||||||||||| |||||||||| ||||    
T  23746207 gtttaatagcagctttcgtcccctaacttttacgaagttgcgattttagcccctt 23746153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 44312756 - 44312792
Alignment:
Q  301 agttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||||||||||||||||||||||||| |||||||    
T  44312756 agttttcgtctcctaacttttacgaagttgcgatttt 44312792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 8074186 - 8074139
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagttacgattttagc 340  Q
    ||||||| |||||||| | ||||||||| |||||||||||||||||||    
T  8074186 ttaatagcagttttcgccccctaactttcacgaagttacgattttagc 8074139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 18186436 - 18186486
Alignment:
Q  287 ttaggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    |||||||||||||| ||||||| | ||||||||||| |||||| |||||||    
T  18186436 ttaggtttaatagtggttttcgccccctaacttttatgaagttgcgatttt 18186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 28117740 - 28117699
Alignment:
Q  248 ctatatttaaccacttattatcaattaagtccatatatttta 289  Q
    ||||||||||||||||| |||||| ||||||| |||||||||    
T  28117740 ctatatttaaccacttactatcaactaagtccttatatttta 28117699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 20185226 - 20185182
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    |||||||||||||||| | ||||||||| |||||||| |||||||    
T  20185226 ttaatagtagttttcgccccctaactttcacgaagttgcgatttt 20185182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 29834179 - 29834223
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    |||||||||||||||| ||| ||||| |||||||||| |||||||    
T  29834179 ttaatagtagttttcgcctcttaactgttacgaagttgcgatttt 29834223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 718 - 677
Alignment:
Q  296 atagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  718 atagcagttttcgtctcctaacttttacgaagttgcgatttt 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 24895 - 24940
Alignment:
Q  292 tttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||    
T  24895 tttagtagcagttttcgtcccctaacttttacgaagttacgatttt 24940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 23220881 - 23220828
Alignment:
Q  284 attttaggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    |||||||| || |||| |||||||| | ||||||||||||||||||||||||||    
T  23220881 attttaggcttgatagcagttttcgccccctaacttttacgaagttacgatttt 23220828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 8010034 - 8009990
Alignment:
Q  285 ttttaggtttaatagtagttttcgtctcctaacttttacgaagtt 329  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||    
T  8010034 ttttaggcttaatagtagttttagcctcctaacttttacgaagtt 8009990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 6556467 - 6556518
Alignment:
Q  142 ccaaattagtcgttaactttgtagcaccctctcaaatagacccttgagatta 193  Q
    ||||||||||| ||||||||| || || ||||||||||||||| ||||||||    
T  6556467 ccaaattagtctttaactttgcaggacactctcaaatagacccctgagatta 6556518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 16545877 - 16545826
Alignment:
Q  289 aggtttaatagtagttttcgtctcctaacttttacgaagttacgattttagc 340  Q
    |||||||||| |||||||||  || |||||||||||||||| ||||||||||    
T  16545877 aggtttaataatagttttcgcttcttaacttttacgaagttgcgattttagc 16545826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 27864184 - 27864221
Alignment:
Q  300 tagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  27864184 tagttttcgtctcctaactttcacgaagttgcgatttt 27864221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 40923742 - 40923701
Alignment:
Q  248 ctatatttaaccacttattatcaattaagtccatatatttta 289  Q
    |||||||||| |||||||||||| |||||||||| |||||||    
T  40923742 ctatatttaatcacttattatcacttaagtccatgtatttta 40923701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 17761002 - 17760966
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagtt 329  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  17761002 ttaatagcagttttcgtctcttaacttttacgaagtt 17760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 18632650 - 18632606
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||| |||||||| | |||||||||||||||||| |||||||    
T  18632650 ttaatagcagttttcgccccctaacttttacgaagttgcgatttt 18632606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 20228242 - 20228278
Alignment:
Q  301 agttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20228242 agttttcgtctcctaacttttacgaagttgcgatttt 20228278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 25144257 - 25144204
Alignment:
Q  287 ttaggtttaatagtagttttcgtctcctaacttttacgaagttacgattttagc 340  Q
    ||||||||||||| | |||||| |||||||| || |||||||| ||||||||||    
T  25144257 ttaggtttaatagcaattttcgcctcctaacattcacgaagttgcgattttagc 25144204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 37263357 - 37263405
Alignment:
Q  289 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||||||| |||||||| | | |||||||||||||||| |||||||    
T  37263357 aggtttaatagcagttttcgccccttaacttttacgaagttgcgatttt 37263405  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 51362858 - 51362815
Alignment:
Q  286 tttaggtttaatagtagttttcgtctcctaacttttacgaagtt 329  Q
    |||||||||||||| |||||||||| |||||||||||| |||||    
T  51362858 tttaggtttaatagcagttttcgtcccctaacttttacaaagtt 51362815  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 1074493 - 1074461
Alignment:
Q  247 cctatatttaaccacttattatcaattaagtcc 279  Q
    |||||||||||||||||| ||||||||||||||    
T  1074493 cctatatttaaccacttactatcaattaagtcc 1074461  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 2653956 - 2654000
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||| |||||| | |||||||||||||||||||| |||||||    
T  2653956 ttaatagcagtttttgcctcctaacttttacgaagttgcgatttt 2654000  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 3658239 - 3658191
Alignment:
Q  289 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    ||||||||||| ||||||||||  |||||||||| |||||| |||||||    
T  3658239 aggtttaatagcagttttcgtcctctaacttttatgaagttgcgatttt 3658191  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 343
Target Start/End: Complemental strand, 33401364 - 33401314
Alignment:
Q  293 ttaatagtagttttcgtctcctaacttttacgaagttacgattttagctcc 343  Q
    ||||||| |||||||  | |||||||||||||||||||||||||| |||||    
T  33401364 ttaatagcagttttcaccccctaacttttacgaagttacgattttggctcc 33401314  T

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Target: scaffold0417 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 9653 - 9604
Alignment:
Q  288 taggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 337  Q
    |||||||||||| |||||||  ||||||||||| |||||||| |||||||    
T  9653 taggtttaatagcagttttcacctcctaactttcacgaagttgcgatttt 9604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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