View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0510_low_3 (Length: 304)

Name: NF0510_low_3
Description: NF0510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0510_low_3
NF0510_low_3
[»] chr2 (7 HSPs)
chr2 (12-209)||(15646439-15646636)
chr2 (12-181)||(15655591-15655760)
chr2 (18-201)||(15626047-15626230)
chr2 (11-182)||(15494780-15494951)
chr2 (23-177)||(15607844-15607999)
chr2 (11-129)||(15535249-15535367)
chr2 (11-129)||(15518431-15518549)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 15646439 - 15646636
Alignment:
Q  12 gaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccattttta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  15646439 gaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctattaacattttta 15646538  T
Q  112 aggctaagtctgcaattggagaaaattatattgatcaatatttctgcaaatgagaagttctggaaatatcctttgttatctatggtggactgatgatg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15646539 aggctaagtctgcaattggagaaaattatattgatcaatatttctgcaaatgagaagttgtggaaatatcctttgttatctatggtggactgatgatg 15646636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 15655591 - 15655760
Alignment:
Q  12 gaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccattttta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  15655591 gaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctattagcattttta 15655690  T
Q  112 aggctaagtctgcaattggagaaaattatattgatcaatatttctgcaaatgagaagttctggaaatatc 181  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  ||||||||||||    
T  15655691 aggctaagtctgcaattggagaaaattatatcgatcaatatttttgcaaatgagaaaatctggaaatatc 15655760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 15626047 - 15626230
Alignment:
Q  18 aaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccatttttaaggcta 117  Q
    ||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  15626047 aaaggcaatccattttgagccaagatatgcaaagctgtctcttcattcacatcacgtgcaaaagctagtgcatttctatctcttaccatttttaaggcta 15626146  T
Q  118 agtctgcaattggagaaaattatattgatcaatatttctgcaaatgagaagttctggaaatatcctttgttatctatggtggac 201  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||||| |  |||| || |||||||||    
T  15626147 agtctgcaattggagaaaattatattgatcaatatttttgcaaataagaagttatgtaaatattccatgttgtccatggtggac 15626230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 15494780 - 15494951
Alignment:
Q  11 agaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccattttt 110  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||| |||||||     
T  15494780 agaatccaatggcatttgattttgagccaagagatgcaaagctgtctcttcattcacatcacgtgcaaaagcaagtgcatttctgcctcttgccattttc 15494879  T
Q  111 aaggctaagtctgcaattggagaaaattatattgatcaatatttctgcaaatgagaagttctggaaatatcc 182  Q
    ||||| ||||||||||||||  |||| |||  |||||||||||| ||||| ||  ||||||| |||||||||    
T  15494880 aaggccaagtctgcaattgggaaaaaatattatgatcaatatttttgcaattgcaaagttcttgaaatatcc 15494951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 15607844 - 15607999
Alignment:
Q  23 cattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccatttttaaggctaagtct 122  Q
    |||| ||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||| ||||| ||| |||||| || ||||||    
T  15607844 cattagatttcgagccaagagatgcaaagctgtctcttcatttacatcacgtacaaaagctagttcattcctatctcttgccaattttaatgcaaagtct 15607943  T
Q  123 gcaattgg-agaaaattatattgatcaatatttctgcaaatgagaagttctggaaa 177  Q
    |||||||| |||||| |||  |||||||||||| || || || |||||| ||||||    
T  15607944 gcaattggaagaaaaatattatgatcaatatttttgtaattgcgaagttgtggaaa 15607999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 15535249 - 15535367
Alignment:
Q  11 agaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccattttt 110  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||| |||| | ||| |  ||||| |||||||     
T  15535249 agaatccaatggcatttgatcttgagccaagagatgcaaagctgtttctttattcacatcgcgtgcaaaagatagttctttcttgtctcttgccattttg 15535348  T
Q  111 aaggctaagtctgcaattg 129  Q
    ||||| |||||||||||||    
T  15535349 aaggccaagtctgcaattg 15535367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 15518431 - 15518549
Alignment:
Q  11 agaatccaaaggcattcgattttgagccaagagatgcaaagctgtctctttattcacatcacgtgcaaaagctagtgcattcctacctcttaccattttt 110  Q
    ||||||||| |||||| |||||| |||||||||||| |||||||| | || |||| |||||||||||||||||||| | ||| |  |||||||||||||     
T  15518431 agaatccaatggcatttgatttttagccaagagatgtaaagctgttttttcattctcatcacgtgcaaaagctagttctttcttgtctcttaccattttg 15518530  T
Q  111 aaggctaagtctgcaattg 129  Q
    ||||| |||||||||||||    
T  15518531 aaggccaagtctgcaattg 15518549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1288 times since January 2019
Visitors: 3643