View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0511_low_3 (Length: 254)
Name: NF0511_low_3
Description: NF0511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0511_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 37 - 242
Target Start/End: Original strand, 32928162 - 32928370
Alignment:
| Q |
37 |
accttgtctttgtagaaaccctagaataagaggctcacgtgggaggactttaatcaagccacgtggaccattaggcatgtctggtctctgaaaaacaaat |
136 |
Q |
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| T |
32928162 |
accttgtctttgtagaaaccctagaataagaggctgacgtgggaggactttaatcaagccacgtggaccattaggcatgtctggtctctgaaaaacaaat |
32928261 |
T |
|
| Q |
137 |
agtac---nnnnnnnnncagtcagcaattgaagagtttaatgttagaagtacaaaacagagagggaaagtacagacaaggatggtgacgaaatgagcaga |
233 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32928262 |
agtacaaaaaaaaaaaacagtcaacaattgaagagtttaatgttagaagtacaaaacagagagggaaagtacagacaagaatggtgacgaaatgagcaga |
32928361 |
T |
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| Q |
234 |
agcaacagc |
242 |
Q |
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||||||||| |
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| T |
32928362 |
agcaacagc |
32928370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 21764282 - 21764203
Alignment:
| Q |
52 |
aaaccctagaataagaggctcacgtgggaggactttaatcaagccacgtggaccattaggcatgtctggtctctgaaaaa |
131 |
Q |
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|||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||| |
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| T |
21764282 |
aaaccctaaaataagaggctcgtttgggatgactttaatcaagccacgtggaccgttaggtaagtctggtctctgaaaaa |
21764203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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