View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0512_high_2 (Length: 392)
Name: NF0512_high_2
Description: NF0512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0512_high_2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 392
Target Start/End: Complemental strand, 3309308 - 3308930
Alignment:
| Q |
21 |
tgtagttgattgtctcttggaggcaacatggttaattttctaccttgcaaaattttaaatggtgccacaaaacatcttaaagagagcgacttgattgtaa |
120 |
Q |
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| T |
3309308 |
tgtagttgattgtgtcttggaggcaacatggttaattttctaccttgcaaaattttaaatggtgccacaaaacatcttaaagagagcgacttgattgtaa |
3309209 |
T |
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| Q |
121 |
attttttaaaatagacttgaaaattcaaatacgatagtttagaaatccataacaatacttttaagacgcgacagttccagcaccaacagttgccaagtca |
220 |
Q |
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| T |
3309208 |
attttttaaaatagacttgaaaattcaaatacgatagtttagaaatccataacaaaacttttaagacgcgacaattccagaaccaacagctgccaagtca |
3309109 |
T |
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| Q |
221 |
acagatgcaattccatgcacattcaaacaaactttca------cttttgactttaagctttgtttaacatcattaacgtgctaatacatatacagaaaat |
314 |
Q |
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| T |
3309108 |
acaggtgcaattccatgcacattcaaacaaactttcactttcacttttgactttaagctttgtttaacatcgttaacgtgctaatacatatatagaaaat |
3309009 |
T |
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| Q |
315 |
atatcaattaagatgattgttaat-gtcagagataaatgatagataccagatactaaagttgtttaatttgtgatttat |
392 |
Q |
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| T |
3309008 |
atatcaattgagatgattgttaatcgtcagagataaatgatagataccagatactaaagttgtttaatctgtgatttat |
3308930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 3227787 - 3227842
Alignment:
| Q |
206 |
acagttgccaagtcaacagatgcaattccatgcacattcaaacaaactttcacttt |
261 |
Q |
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| T |
3227787 |
acagttgccaagtcaacagatgcaattccatgcacattcaaacgaactttcacttt |
3227842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 8030530 - 8030566
Alignment:
| Q |
82 |
gtgccacaaaacatcttaaagagagcgacttgattgt |
118 |
Q |
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| T |
8030530 |
gtgccacaaaacgtcttaaagagagcgacctgattgt |
8030566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 19578424 - 19578495
Alignment:
| Q |
38 |
tggaggcaacatggttaattttctaccttgcaaaattttaaatggtgccacaaaacatcttaaagagagcga |
109 |
Q |
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| T |
19578424 |
tggaggcagcatggttgatagtcttccttgcacaattttaggtagtgccacaaaacgtcttaaagagagcga |
19578495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 12254120 - 12254092
Alignment:
| Q |
82 |
gtgccacaaaacatcttaaagagagcgac |
110 |
Q |
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| T |
12254120 |
gtgccacaaaacatcttaaagagagcgac |
12254092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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