View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0512_low_4 (Length: 285)
Name: NF0512_low_4
Description: NF0512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0512_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 40 - 274
Target Start/End: Original strand, 21273053 - 21273287
Alignment:
| Q |
40 |
gttcctccctatcatggaaggaaagccaagatatttatcggttcctattgcaatgttgatttgtaaatatcttagttatacaatatttttagagtggaca |
139 |
Q |
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| T |
21273053 |
gttcctccctatcatggaaggaaagccaagatatttatcggttcctattgcaatgttgatttgtaaataccttcgttatacaatatttttagagtggaca |
21273152 |
T |
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| Q |
140 |
gaaatggataacttggacgcagttacttggtctcctcatatggtagttattgacttggaattcaacgggaacttgactgcttgtgtgaattccttctctt |
239 |
Q |
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| T |
21273153 |
gaaatggataacttggacgcagttacttggtctcctcatatggtagttattgacttggaattcaacgggaacttgactgcttgtgtgaattccttctctt |
21273252 |
T |
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| Q |
240 |
cctctatttcttcttccagacccattctcgtctct |
274 |
Q |
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| T |
21273253 |
cctctatttcttcttccagacccattctcatctct |
21273287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 6752049 - 6752112
Alignment:
| Q |
42 |
tcctccctatcatggaaggaaagccaagatatttatcggttcctattgcaatgttgatttgtaa |
105 |
Q |
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| T |
6752049 |
tcctccctatcatggaaggaaggccgagatatttatcgatttcaattgcaatgttgacttgtaa |
6752112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 6956772 - 6956835
Alignment:
| Q |
42 |
tcctccctatcatggaaggaaagccaagatatttatcggttcctattgcaatgttgatttgtaa |
105 |
Q |
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| T |
6956772 |
tcctccctgtcatggaaggaaggtcgagatatttaccggttccaattgcaatgttgacttgtaa |
6956835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 22010176 - 22010234
Alignment:
| Q |
47 |
cctatcatggaaggaaagccaagatatttatcggttcctattgcaatgttgatttgtaa |
105 |
Q |
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| T |
22010176 |
cctatcacggaaggaaggccaaggtatttaccggttcaaattgcaatgttgacttgtaa |
22010234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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