View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0515_high_2 (Length: 418)
Name: NF0515_high_2
Description: NF0515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0515_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 29 - 413
Target Start/End: Complemental strand, 5554675 - 5554291
Alignment:
| Q |
29 |
agcaaggagattgttcaaagttcaaaggcaatatacctcattgctgcaagaaaatccctacagttgtagaccttctccctggtgtaccttacaatcaaca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5554675 |
agcaaggagattgttcaaagttcaaaggcaatatacctcattgctgcaagaaaatccctacagttgtagaccttctccctggtgtaccttacaatcaaca |
5554576 |
T |
|
| Q |
129 |
gttctcaaactgttgtaaaggcggagtcgttgcagcatggggacaagatcctgcagaagctatatcagcttttcaagttagtgttggacaagcaggtgcc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5554575 |
gttctcaaactgttgtaaaggcggagtcgttgcagcatggggacaagatcctgcagaagctatatcagcttttcaagttagtgttggacaagcaggtacc |
5554476 |
T |
|
| Q |
229 |
tcaaaccgaacggttaaacttccgaagaatttcactcttttggctcctggacctggttacacttgtggccctgcaaaggttgttccttccaccaatttcc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5554475 |
tcaaaccgaacggttaaacttccgaagaatttcactcttttggctcctggacctggttacacttgtggccctgcaaaggttgttccttccaccaatttcc |
5554376 |
T |
|
| Q |
329 |
ttacacctgataggcgccgaaagacacaagcattgagtaagtttctctaactagacaatctcaatttcttcactgtttttcacat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5554375 |
ttacacctgataggcgccgaaagacacaagcattgagtaagtttctctaactagacaatctcaatttcttcactgtttttcacat |
5554291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 29 - 371
Target Start/End: Complemental strand, 5012523 - 5012181
Alignment:
| Q |
29 |
agcaaggagattgttcaaagttcaaaggcaatatacctcattgctgcaagaaaatccctacagttgtagaccttctccctggtgtaccttacaatcaaca |
128 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5012523 |
agcaaggagattgctcaaaattcaaaggcaatgtacctcattgttgcaagaaaactccaacagttgtagaccttctccctggtgtaccttacaatcaaca |
5012424 |
T |
|
| Q |
129 |
gttctcaaactgttgtaaaggcggagtcgttgcagcatggggacaagatcctgcagaagctatatcagcttttcaagttagtgttggacaagcaggtgcc |
228 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||||||||||||||| ||| || ||| | |||||||| |||||||||||||||||||| ||| | |
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| T |
5012423 |
attctcaaactgttgtaaaggtggagttgtagcagcatggggacaagacccttcatcagcagtttcagctttccaagttagtgttggacaagctggtact |
5012324 |
T |
|
| Q |
229 |
tcaaaccgaacggttaaacttccgaagaatttcactcttttggctcctggacctggttacacttgtggccctgcaaaggttgttccttccaccaatttcc |
328 |
Q |
| |
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|||||| || || ||||| || ||||| |||||||| ||||||||||||||||| || |||||||| ||||| ||| ||||||||||||||| ||||| |
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|
| T |
5012323 |
tcaaacaagactgtgaaactccctaagaacttcactctcttggctcctggacctggctatacttgtggtcctgctaagattgttccttccaccactttcc |
5012224 |
T |
|
| Q |
329 |
ttacacctgataggcgccgaaagacacaagcattgagtaagtt |
371 |
Q |
| |
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| || | |||| ||| || ||||| |||||| | |||||||| |
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|
| T |
5012223 |
tcaccacggataagcgtcgcaagactcaagcacttagtaagtt |
5012181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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