View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0515_high_3 (Length: 365)
Name: NF0515_high_3
Description: NF0515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0515_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 430801 - 430482
Alignment:
| Q |
15 |
gaccaatacggtgaccggttctttctcaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaatt |
114 |
Q |
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| T |
430801 |
gaccaatacggtgaccggttctttctcaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaatt |
430702 |
T |
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| Q |
115 |
ttttgaaggactgttttgtccataatatccaaaccaaacatttccatgttgatcactctttgttaggattctaaggaaacaatctacttcaccatctttt |
214 |
Q |
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| T |
430701 |
ttttgaaggactgttttgtccataatatccaaaccaaacatttccatgtt---cactctttgttaggattctaaggaaacaatctacttcaccatctttt |
430605 |
T |
|
| Q |
215 |
tatttaacaagtttgaaaatcaatttaaaattaaagaatcaattcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaat |
314 |
Q |
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| T |
430604 |
tatttaacaagtttgaaaatcaatttaaaattaaagaatcaatgcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaat |
430505 |
T |
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| Q |
315 |
gcaagtacaagagaataacacgt |
337 |
Q |
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| T |
430504 |
gcaagtacaagagaataacacgt |
430482 |
T |
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