View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0515_high_4 (Length: 267)

Name: NF0515_high_4
Description: NF0515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0515_high_4
NF0515_high_4
[»] chr3 (5 HSPs)
chr3 (42-245)||(11651873-11652077)
chr3 (145-245)||(48648903-48649003)
chr3 (145-233)||(51826769-51826857)
chr3 (91-130)||(48648835-48648874)
chr3 (49-77)||(51826988-51827016)
[»] chr7 (3 HSPs)
chr7 (42-245)||(31954498-31954702)
chr7 (145-236)||(31953570-31953661)
chr7 (91-130)||(31953690-31953729)
[»] chr5 (5 HSPs)
chr5 (42-236)||(41045956-41046151)
chr5 (42-189)||(31082169-31082317)
chr5 (42-136)||(22799148-22799242)
chr5 (42-136)||(19366001-19366095)
chr5 (150-233)||(16154735-16154818)
[»] chr4 (4 HSPs)
chr4 (42-245)||(5590306-5590513)
chr4 (42-245)||(48127857-48128064)
chr4 (145-245)||(24158550-24158650)
chr4 (91-130)||(24158482-24158521)
[»] chr1 (2 HSPs)
chr1 (42-136)||(50271194-50271288)
chr1 (145-245)||(50271067-50271167)
[»] chr2 (2 HSPs)
chr2 (145-245)||(23501793-23501893)
chr2 (51-130)||(23501917-23501996)
[»] chr6 (3 HSPs)
chr6 (145-219)||(33436004-33436078)
chr6 (91-130)||(33435936-33435975)
chr6 (49-77)||(33435845-33435873)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 11651873 - 11652077
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa-nnnn 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||         
T  11651873 tcaaccgtattgaggacatggaattcataacaacaatgtattgccactgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttat 11651972  T
Q  141 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttg 240  Q
        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||    
T  11651973 ttttacataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttcttcccattg 11652072  T
Q  241 cttct 245  Q
     ||||    
T  11652073 tttct 11652077  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 48648903 - 48649003
Alignment:
Q  145 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 244  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| ||| |||    
T  48648903 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagcctcatttctccacccattgtttc 48649002  T
Q  245 t 245  Q
    |    
T  48649003 t 48649003  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 51826857 - 51826769
Alignment:
Q  145 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttcta 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||    
T  51826857 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagcctcatttctcta 51826769  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 48648835 - 48648874
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  48648835 atgaatggaagtgatgttctacttgttcaacaagttcaat 48648874  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 51827016 - 51826988
Alignment:
Q  49 tattgaggacatggaattcataacaacaa 77  Q
    |||||||||||||||||||||||||||||    
T  51827016 tattgaggacatggaattcataacaacaa 51826988  T

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Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 245
Target Start/End: Complemental strand, 31954702 - 31954498
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa-nnnn 140  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||         
T  31954702 tcaaccgtattgaggacatgaaattcataacaacaatgtattgccaccgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttat 31954603  T
Q  141 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttg 240  Q
        |||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||    
T  31954602 ttttacataatattgcttgttaatttaatcttgattaatattttgaattcaaaatgatcgaggctgctgtatcgtgcaagccccatttttctacccattg 31954503  T
Q  241 cttct 245  Q
     ||||    
T  31954502 tttct 31954498  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 31953661 - 31953570
Alignment:
Q  145 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccc 236  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||    
T  31953661 acataataatgcttgttaatttaatcttcattaatattttgaattcaaaatgattgaggctgctgtgtcgtgcaagcctcatttctctaccc 31953570  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 31953729 - 31953690
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  31953729 atgaatggaagtcttgttctacttgttcaacaagttcaat 31953690  T

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Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 236
Target Start/End: Original strand, 41045956 - 41046151
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa-nnnn 140  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||         
T  41045956 tcaaccgtattgagtacatggaattcataacaacaatgtattgccaccgatgaattgaagtgttgttctacttgttcaataagttcaatgcataatttat 41046055  T
Q  141 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccc 236  Q
        |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  41046056 ttttacataataattcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagccccatttttctaccc 41046151  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 42 - 189
Target Start/End: Complemental strand, 31082317 - 31082169
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa-nnnn 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||         
T  31082317 tcaaccgtattgaggacatggaattcataacaacaatgtattgccactaatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttta 31082218  T
Q  141 nnngacataataatgcttgttaatttaattttgattaatattttgaatt 189  Q
        ||||||||||||||||||||||||| |||||||||||||||||||    
T  31082217 ttttacataataatgcttgttaatttaatcttgattaatattttgaatt 31082169  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 22799242 - 22799148
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 136  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  22799242 tcaaccgtattgaggacatgaaattcataacaacaatgtattgccaccgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataa 22799148  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 19366095 - 19366001
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 136  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| ||||  |||||||||||||||||| |||||||||||||||||||||    
T  19366095 tcaaccgtattgaggacatggaattcataacaacgctgtattgccaccgatgatatgaagtgttgttctacttcttcaacaagttcaatgcataa 19366001  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 16154735 - 16154818
Alignment:
Q  150 ataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttcta 233  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||    
T  16154735 ataatgcttgttaattaaatcttgattaatattttgaattcaaaatgatcgaggcggctgtatcgtgcaagcctcatttctcta 16154818  T

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Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 42 - 245
Target Start/End: Complemental strand, 5590513 - 5590306
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa----n 137  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||         
T  5590513 tcaaccgtattgaggacatgtaattcataacaacaatgtatttccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataattttt 5590414  T
Q  138 nnnnnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccct 237  Q
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  5590413 tttttttacataataatgcttgttaattaaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttctaccca 5590314  T
Q  238 ttgcttct 245  Q
    ||| ||||    
T  5590313 ttgtttct 5590306  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 48127857 - 48128064
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa----n 137  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||         
T  48127857 tcaaccgtattgaggacatgtaattcataacaacaatgtatttccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataattttt 48127956  T
Q  138 nnnnnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccct 237  Q
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  48127957 tttttttacataataatgcttgttaattaaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttctaccca 48128056  T
Q  238 ttgcttct 245  Q
    ||| ||||    
T  48128057 ttgtttct 48128064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 24158550 - 24158650
Alignment:
Q  145 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 244  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| ||| |||    
T  24158550 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagcctcatttctccacccattgtttc 24158649  T
Q  245 t 245  Q
    |    
T  24158650 t 24158650  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 24158482 - 24158521
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  24158482 atgaatggaagtgatgttctacttgttcaacaagttcaat 24158521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 50271288 - 50271194
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50271288 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 50271194  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 50271167 - 50271067
Alignment:
Q  145 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 244  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |||    
T  50271167 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagccccatttttctacccattgtttc 50271068  T
Q  245 t 245  Q
    |    
T  50271067 t 50271067  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 23501893 - 23501793
Alignment:
Q  145 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 244  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||| ||||||| ||| |||    
T  23501893 acataataatgcttgttaatttaatcttgattaatattttgaattaaaaatgattgaggctagtgtatcgtgcaaacctcatttctctacccattgtttc 23501794  T
Q  245 t 245  Q
    |    
T  23501793 t 23501793  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 23501996 - 23501917
Alignment:
Q  51 ttgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||||||| ||||| ||||||||||| |||| ||||  |||||||| ||||||||| ||||||||| |||||||||||    
T  23501996 ttgaggacatagaattgataacaacaatatattaccactgatgaattgtagtgttgttatacttgttcgacaagttcaat 23501917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 33436004 - 33436078
Alignment:
Q  145 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaa 219  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  33436004 acataataatgcttgttaatttaatcttgattaatattttgaattcaaactgactgaggttgctgtatcgtgcaa 33436078  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 33435936 - 33435975
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  33435936 atgaatggaagtgttgttctacttgttcaacaagttcaat 33435975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 33435845 - 33435873
Alignment:
Q  49 tattgaggacatggaattcataacaacaa 77  Q
    |||||||||||||||||||||||||||||    
T  33435845 tattgaggacatggaattcataacaacaa 33435873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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