View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0515_high_6 (Length: 225)
Name: NF0515_high_6
Description: NF0515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0515_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 3899163 - 3898996
Alignment:
| Q |
20 |
ttaacaaacatatatgtattatgaaagttgagaaacataaattcacagcattataatataataccgattgattaatgccttaattcatcattttttacat |
119 |
Q |
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| T |
3899163 |
ttaacaaacatatctgtattatgaaagttgagaaacataaattcacagcattataatataataccgattgattaatgccttaattcattattttttacat |
3899064 |
T |
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| Q |
120 |
taaatatcccttactccttcccagccacgacattcttggccgcgtccaatgctccttccaccgcctcct |
188 |
Q |
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| T |
3899063 |
t-aatatcccttactccttcccagccacgacattcttggccgcgtccaatgctccttccaccgcctcct |
3898996 |
T |
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