View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0515_low_4 (Length: 313)
Name: NF0515_low_4
Description: NF0515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0515_low_4 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 85 - 313
Target Start/End: Complemental strand, 15489470 - 15489241
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattaca |
183 |
Q |
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| T |
15489470 |
tcatcagtactgatatacactgaaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattaca |
15489371 |
T |
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| Q |
184 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcacgaaaaagatcataga |
283 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
15489370 |
ctgttgtaccaatctattgtttctgttgaataacattgcagttgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15489271 |
T |
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| Q |
284 |
tggagtctcaattgtttacacatttatttt |
313 |
Q |
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| T |
15489270 |
tggaggcttaattgcttccacatttatttt |
15489241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 85 - 313
Target Start/End: Complemental strand, 15431075 - 15430846
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattaca |
183 |
Q |
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||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15431075 |
tcatcagtactgatatacactgaaaatcatgttgtagcaaaaatctaaacaagacatgttcaacttcatccaaaaataatgtattactcaagtaattaca |
15430976 |
T |
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| Q |
184 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcacgaaaaagatcataga |
283 |
Q |
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| T |
15430975 |
ctgttgtaccaatctattgtttctgttgaataacattgcagttgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15430876 |
T |
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| Q |
284 |
tggagtctcaattgtttacacatttatttt |
313 |
Q |
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| T |
15430875 |
tggaggcttaattgcttccacatttatttt |
15430846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 85 - 313
Target Start/End: Complemental strand, 15557511 - 15557282
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattaca |
183 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15557511 |
tcatcagtactgatatacactgaaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattaca |
15557412 |
T |
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| Q |
184 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcacgaaaaagatcataga |
283 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
15557411 |
ctgttgtaccaatctattgtttctgttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15557312 |
T |
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| Q |
284 |
tggagtctcaattgtttacacatttatttt |
313 |
Q |
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| T |
15557311 |
tggaggcttaattgcttccacatttatttt |
15557282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 85 - 313
Target Start/End: Complemental strand, 15450535 - 15450306
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattaca |
183 |
Q |
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||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
15450535 |
tcatcagtactgatatacactgaaaatcatgttgtagcaaaaatctaaacaagacatgttcaacttcatccaaaaagaatgtattactcaagtaattata |
15450436 |
T |
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| Q |
184 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcacgaaaaagatcataga |
283 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
15450435 |
ctgttgtaccaatctattgtttctgttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15450336 |
T |
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| Q |
284 |
tggagtctcaattgtttacacatttatttt |
313 |
Q |
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| T |
15450335 |
tggaggcttaattgcttccaaatttatttt |
15450306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 85 - 313
Target Start/End: Complemental strand, 16944099 - 16943873
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattaca |
183 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16944099 |
tcatcagtactgatatacactgaaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattact |
16944000 |
T |
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| Q |
184 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcacgaaaaagatcataga |
283 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
16943999 |
ctgt---accaatctattgtttctgttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
16943903 |
T |
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| Q |
284 |
tggagtctcaattgtttacacatttatttt |
313 |
Q |
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| T |
16943902 |
tggaggcttaattgcttctacatttatttt |
16943873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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