View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0517_high_10 (Length: 317)
Name: NF0517_high_10
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0517_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 5984020 - 5984213
Alignment:
| Q |
30 |
ataatcattgactcccacatgaactgacctagttcaggccttttaaacttttcaaactttatgtagaaactcaggaaagtagagtcgaatccaaactgga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5984020 |
ataatcattgactcccacatgaactgacctagttcaggccttttaaacttttcaaactttctgtagaaactcaggaaagtagagtcgaatccaaactaga |
5984119 |
T |
|
| Q |
130 |
aggaaccatatagggtacttgaagcgacctaaaaatttgagggttgctcaaaaaacaatgaagtcgccaccaaaggttattaaaatagggaaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5984120 |
aggaaccatatagggtacttgaagcgacctaaaaatttgagggttgctcaaaaaacaatgaagtcgccaccaaaggttattaaaataggaaaaa |
5984213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 5984241 - 5984293
Alignment:
| Q |
258 |
ctttaaaaccagattttagatttggaagtggattacgcataggaaaagaatta |
310 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
5984241 |
cttcaaaaccagattttagatttggaagtcgattatgcataggaaaagtatta |
5984293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 5679707 - 5679640
Alignment:
| Q |
168 |
gagggttgctcaaaaaacaatgaagtcgccaccaaaggttattaaaatagggaaaaccttggaaaaaa |
235 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||| ||||||||||||| ||||| |||| ||||| |
|
|
| T |
5679707 |
gagggttgctcgtaaaacaataaagtcgtcaccaaaacttattaaaataggaaaaacattgggaaaaa |
5679640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 14513796 - 14513871
Alignment:
| Q |
149 |
tgaagcgacctaaaaatttgagggttgctcaaaaaacaatgaagtcgccaccaaaggttattaaaatagggaaaac |
224 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||||||||| || | ||| |||||||| |||||| |
|
|
| T |
14513796 |
tgaagcggcctaaaaatttgagggttgtgtgaaaaataatgaagtcgccacaaatgtttaataaaatagagaaaac |
14513871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1110 times since January 2019
Visitors: 3663