View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0517_high_18 (Length: 237)

Name: NF0517_high_18
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0517_high_18
NF0517_high_18
[»] chr5 (14 HSPs)
chr5 (1-233)||(37430280-37430511)
chr5 (39-222)||(37698327-37698509)
chr5 (110-199)||(37391455-37391544)
chr5 (110-209)||(37595877-37595976)
chr5 (110-209)||(37641428-37641527)
chr5 (110-211)||(37825458-37825559)
chr5 (110-209)||(37713171-37713270)
chr5 (110-208)||(37534648-37534746)
chr5 (110-216)||(37704208-37704314)
chr5 (110-189)||(37399317-37399396)
chr5 (110-181)||(37411820-37411891)
chr5 (110-199)||(37380837-37380926)
chr5 (141-209)||(37437248-37437316)
chr5 (110-182)||(37441518-37441590)
[»] chr4 (1 HSPs)
chr4 (110-222)||(24216251-24216363)
[»] chr3 (1 HSPs)
chr3 (110-199)||(14554616-14554705)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 37430511 - 37430280
Alignment:
Q  1 aatcaaatccaaaatcctaaacaagagagtataatttcctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgat 100  Q
    ||||||||  |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  37430511 aatcaaataaaaaatcctcaagaagagagtatagtttcctctaaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgat 37430412  T
Q  101 gatgtccatctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactta 200  Q
    | || | | ||| |||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  37430411 gctg-ctaactctttttacttcctatacattttcaatgtgcaagcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttc 37430313  T
Q  201 atctcaacctggtttttggtctctctgctcctc 233  Q
    ||||||||||||||||||||||| ||| |||||    
T  37430312 atctcaacctggtttttggtctcactgttcctc 37430280  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 37698509 - 37698327
Alignment:
Q  39 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgatgtccatctcattttacttcctatacattctcaatg 138  Q
    ||||||||||||||||||| | ||||||| |||||| |||||||||||        |||| || ||   | |||||||||||||||| ||| ||||| |     
T  37698509 ctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgctta-ctcattttacttcctacacactctcatta 37698411  T
Q  139 tccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacctggtttttggtct 222  Q
    | ||||||| |||||||||||||||||||||||||||| ||||||||||   | |||||||  |||||||||| | ||||||||    
T  37698410 tgcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtct 37698327  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 37391455 - 37391544
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 199  Q
    |||||||||||||||||||  ||||| ||| ||||| | |||| || ||||||||| |||||||||| |||||||||||| |||||||||    
T  37391455 ctcattttacttcctatactctctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacactt 37391544  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 37595976 - 37595877
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 209  Q
    |||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||||||||    
T  37595976 ctcattttacttcctacactttctcattgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacc 37595877  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 37641527 - 37641428
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 209  Q
    |||||||||||||||| || |||||| ||| ||||||  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| ||||    
T  37641527 ctcattttacttcctacactttctcactgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaacc 37641428  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 37825559 - 37825458
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 209  Q
    |||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| ||||    
T  37825559 ctcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaacc 37825460  T
Q  210 tg 211  Q
    ||    
T  37825459 tg 37825458  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 37713270 - 37713171
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 209  Q
    |||||||||||||| | || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||||||||    
T  37713270 ctcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacc 37713171  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 37534746 - 37534648
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaac 208  Q
    |||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||| ||||| ||||||||    
T  37534746 ctcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctcaac 37534648  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 37704314 - 37704208
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 209  Q
    |||||||||||||||| || |||||| ||| || |||  |||| || || |||||||||||||||||  ||||||||| | ||||||||| |||| ||||    
T  37704314 ctcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacc 37704215  T
Q  210 tggtttt 216  Q
     ||||||    
T  37704214 cggtttt 37704208  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 37399317 - 37399396
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcatttttt 189  Q
    ||||||||||||| || || |||||| | | ||||||| ||||||  |||||||||||||||||||| || |||||||||    
T  37399317 ctcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattcatttttt 37399396  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 37411820 - 37411891
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaact 181  Q
    |||||||||||||||| || |||||| | | |||| || ||||||| | |||||||||||||||||||||||    
T  37411820 ctcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaact 37411891  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 37380837 - 37380926
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 199  Q
    |||||||||||||| | || |||||| ||| ||||||  |||| |  |||||||||||||| ||||| |||||||||| | |||||||||    
T  37380837 ctcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactcattttctttcaacactt 37380926  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 37437316 - 37437248
Alignment:
Q  141 caaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 209  Q
    ||||||| ||||||  |||||||| ||||||||||| ||||| ||| || ||||||||| |||||||||    
T  37437316 caaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctcaacc 37437248  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 37441590 - 37441518
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactc 182  Q
    ||||||||||||||||||| |||||| |||  ||| |  ||||||  |||||||||||||||||||| |||||    
T  37441590 ctcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc 37441518  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 24216251 - 24216363
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 209  Q
    ||||||||||||| || || | |||| | | ||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||| |||| ||||    
T  24216251 ctcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacc 24216350  T
Q  210 tggtttttggtct 222  Q
     | | ||||||||    
T  24216351 cgatatttggtct 24216363  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 14554705 - 14554616
Alignment:
Q  110 ctcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 199  Q
    ||||||||||||||||||| |||||| ||| ||||||  ||||||  |||||||||||||||||||| ||||| |||| | |||||||||    
T  14554705 ctcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacactt 14554616  T

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