View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0517_high_19 (Length: 236)

Name: NF0517_high_19
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0517_high_19
NF0517_high_19
[»] chr5 (14 HSPs)
chr5 (1-232)||(37430280-37430511)
chr5 (39-221)||(37698327-37698509)
chr5 (39-198)||(37391385-37391544)
chr5 (95-208)||(37595877-37595990)
chr5 (39-208)||(37641428-37641597)
chr5 (39-208)||(37713171-37713340)
chr5 (100-215)||(37704208-37704323)
chr5 (23-180)||(37411734-37411891)
chr5 (106-210)||(37825458-37825562)
chr5 (39-207)||(37534648-37534816)
chr5 (100-181)||(37441518-37441599)
chr5 (39-208)||(37437248-37437417)
chr5 (103-198)||(37380831-37380926)
chr5 (106-188)||(37399314-37399396)
[»] chr4 (2 HSPs)
chr4 (103-221)||(24216245-24216363)
chr4 (100-207)||(16841384-16841491)
[»] chr3 (1 HSPs)
chr3 (103-198)||(14554616-14554711)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37430511 - 37430280
Alignment:
Q  1 aatcaaatccaaaatcctaaacaagagagtataatttcctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgat 100  Q
    ||||||||  |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  37430511 aatcaaataaaaaatcctcaagaagagagtatagtttcctctaaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgat 37430412  T
Q  101 gctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaa 200  Q
    |||||| |||| |||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  37430411 gctgctaactctttttacttcctatacattttcaatgtgcaagcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttca 37430312  T
Q  201 tctcaacctggtttttggtctctctgctcctc 232  Q
    |||||||||||||||||||||| ||| |||||    
T  37430311 tctcaacctggtttttggtctcactgttcctc 37430280  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 37698509 - 37698327
Alignment:
Q  39 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 138  Q
    ||||||||||||||||||| | ||||||| |||||| |||||||||||        |||| || |||||||||||||||||||||| ||| ||||| | |    
T  37698509 ctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattat 37698410  T
Q  139 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacctggtttttggtct 221  Q
     ||||||| |||||||||||||||||||||||||||| ||||||||||   | |||||||  |||||||||| | ||||||||    
T  37698409 gcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtct 37698327  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 198
Target Start/End: Original strand, 37391385 - 37391544
Alignment:
Q  39 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 138  Q
    ||||||||||||||||| | | || |||| |||||| || ||||||||        |||| || |||||||||||||||||||||||||  ||||| |||    
T  37391385 ctctaaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgt 37391484  T
Q  139 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 198  Q
     ||||| | |||| || ||||||||| |||||||||| |||||||||||| |||||||||    
T  37391485 gcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacactt 37391544  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 37595990 - 37595877
Alignment:
Q  95 gttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaac 194  Q
    |||| ||||||||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | |||||    
T  37595990 gttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaac 37595891  T
Q  195 acttaatctcaacc 208  Q
    |||| |||||||||    
T  37595890 acttcatctcaacc 37595877  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 37641597 - 37641428
Alignment:
Q  39 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 138  Q
    ||||||||||| ||||||| | ||| ||| |||||| || ||||||||        |||| || || ||||||||||||||||||| || |||||| |||    
T  37641597 ctctaaatgggatccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgt 37641498  T
Q  139 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 208  Q
     ||||||  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| ||||    
T  37641497 gcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaacc 37641428  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 37713340 - 37713171
Alignment:
Q  39 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 138  Q
    ||||||||||| ||||||| | ||| ||| |||||| || ||||||||        |||| || |||||||||||||||||||| | || |||||| |||    
T  37713340 ctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttctcactgt 37713241  T
Q  139 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 208  Q
     |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||||||||    
T  37713240 gcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacc 37713171  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 37704323 - 37704208
Alignment:
Q  100 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactta 199  Q
    ||||||||||||||||||||||||| || |||||| ||| || |||  |||| || || |||||||||||||||||  ||||||||| | |||||||||     
T  37704323 tgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttc 37704224  T
Q  200 atctcaacctggtttt 215  Q
    |||| |||| ||||||    
T  37704223 atctaaacccggtttt 37704208  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 37411734 - 37411891
Alignment:
Q  23 aagagagtataatttcctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcc 122  Q
    |||||||| ||| || |||||||||||||||| || | |||||||  | ||| || ||||||||        |||| ||||| |||||||||||||||||    
T  37411734 aagagagtttaagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcc 37411833  T
Q  123 tatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaact 180  Q
    || || |||||| | | |||| || ||||||| | |||||||||||||||||||||||    
T  37411834 tacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaact 37411891  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 37825562 - 37825458
Alignment:
Q  106 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctca 205  Q
    ||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| |    
T  37825562 ttactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaa 37825463  T
Q  206 acctg 210  Q
    |||||    
T  37825462 acctg 37825458  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 207
Target Start/End: Complemental strand, 37534816 - 37534648
Alignment:
Q  39 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 138  Q
    ||||||||||| ||||||| | ||| ||| |||||| || ||||||||        |||| || || ||||||||||||||||||| || |||||| |||    
T  37534816 ctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgt 37534717  T
Q  139 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaac 207  Q
     |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||| ||||| ||||||||    
T  37534716 gcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctcaac 37534648  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 37441599 - 37441518
Alignment:
Q  100 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactc 181  Q
    |||||||||||||||||||||||||||| |||||| |||  ||| |  ||||||  |||||||||||||||||||| |||||    
T  37441599 tgctgcttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc 37441518  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 37437417 - 37437248
Alignment:
Q  39 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 138  Q
    ||||||||||||||||||| | |||| || |||| | ||||| |||||        |||| || |||||||||| |||||| || | || |||||| | |    
T  37437417 ctctaaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattat 37437318  T
Q  139 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 208  Q
     ||||||| ||||||  |||||||| ||||||||||| ||||| ||| || ||||||||| |||||||||    
T  37437317 gcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctcaacc 37437248  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 37380831 - 37380926
Alignment:
Q  103 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 198  Q
    |||||||||||||||||||| | || |||||| ||| ||||||  |||| |  |||||||||||||| ||||| |||||||||| | |||||||||    
T  37380831 tgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactcattttctttcaacactt 37380926  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 37399314 - 37399396
Alignment:
Q  106 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcatttttt 188  Q
    |||||||||||||||| || || |||||| | | ||||||| ||||||  |||||||||||||||||||| || |||||||||    
T  37399314 ttactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattcatttttt 37399396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 24216245 - 24216363
Alignment:
Q  103 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 202  Q
    ||||||||||||||||||| || || | |||| | | ||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||| |||    
T  24216245 tgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 24216344  T
Q  203 tcaacctggtttttggtct 221  Q
    | |||| | | ||||||||    
T  24216345 tgaacccgatatttggtct 24216363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 16841384 - 16841491
Alignment:
Q  100 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactta 199  Q
    ||||||||||||| ||||||||  | || || ||| | | ||||||  ||||||| ||||| |||||||| ||||| |||||||||| | |||||||||     
T  16841384 tgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttc 16841483  T
Q  200 atctcaac 207  Q
    ||||||||    
T  16841484 atctcaac 16841491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 14554711 - 14554616
Alignment:
Q  103 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 198  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||  ||||||  |||||||||||||||||||| ||||| |||| | |||||||||    
T  14554711 tgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacactt 14554616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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