View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0517_high_2 (Length: 510)
Name: NF0517_high_2
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0517_high_2 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: scaffold0352 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 29 - 502
Target Start/End: Original strand, 13634 - 14109
Alignment:
| Q |
29 |
aacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaacatttgttt---cagatctatactgattcaaata |
125 |
Q |
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| T |
13634 |
aacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaacatttgtttattcagatctatactgattcaaata |
13733 |
T |
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| Q |
126 |
tatttcataagaacggagttaaaattgtccaagatgcaaatataattttagaactcgttgaagcaggtgtagaaaatgctattgattgatgattttgtat |
225 |
Q |
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| T |
13734 |
tatttcataagaacggagttaaaattgtccaagatgcaaatataattttagaactcgttgaagcaggtgtagaaaatgctattgattgatgattttgtat |
13833 |
T |
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| Q |
226 |
gcaatgacaaatggttcaggtttaacactactcttatgtaatttggaatggacttagttgtaggacttgatttttggagcaggtgtagattcaacttaat |
325 |
Q |
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| T |
13834 |
gcaatgacaaatggttcaggtttaacactactcttatgtaatttggaatggacttagttgtaggacttgatttttggagcaggtgtagattcaacttaat |
13933 |
T |
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| Q |
326 |
gttttcccaaatttaagtcnnnnnnnnnngttgaagttctcttatcatatatgttttacctatttgcattttagtgtaacctctttccgtgctagtgtat |
425 |
Q |
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| T |
13934 |
gttttcccaaatttaagtc-tttttttttgttgaagttctcttatcatatatgttttacctatttgcattttagtgtaacctctttccgtgctagtgtat |
14032 |
T |
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| Q |
426 |
tggctatgttttaattggattggacctggttccccaatattgagcgattcattttagagtgtaagctgagtattatc |
502 |
Q |
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| T |
14033 |
tggctatgttttaattggattggacctggttccccaatattgagcgattcattttagagtgtaagctgagtattatc |
14109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 20218352 - 20218286
Alignment:
| Q |
29 |
aacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaac |
95 |
Q |
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| T |
20218352 |
aacaagttgtataagttacttaattttattttttcatgtttatataataatctaatattatgtcaac |
20218286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 40290826 - 40290761
Alignment:
| Q |
38 |
tataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaacatttgttt |
103 |
Q |
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| T |
40290826 |
tataaattaattaattttatttttacatgtttatatgataaactaatattatgccatcattagttt |
40290761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 7860645 - 7860712
Alignment:
| Q |
32 |
aagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaacattt |
99 |
Q |
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| T |
7860645 |
aagttgtataaatttattaattttatttttgcatgtgtatatgataatctaatattatgtcatcattt |
7860712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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