View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0517_high_23 (Length: 224)

Name: NF0517_high_23
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0517_high_23
NF0517_high_23
[»] chr5 (14 HSPs)
chr5 (6-224)||(37430280-37430498)
chr5 (17-199)||(37698327-37698509)
chr5 (40-199)||(37391385-37391544)
chr5 (30-143)||(37595877-37595990)
chr5 (30-199)||(37641428-37641597)
chr5 (30-199)||(37713171-37713340)
chr5 (23-138)||(37704208-37704323)
chr5 (58-215)||(37411734-37411891)
chr5 (28-132)||(37825458-37825562)
chr5 (31-199)||(37534648-37534816)
chr5 (57-138)||(37441518-37441599)
chr5 (30-199)||(37437248-37437417)
chr5 (40-135)||(37380831-37380926)
chr5 (50-132)||(37399314-37399396)
[»] chr4 (2 HSPs)
chr4 (17-135)||(24216245-24216363)
chr4 (31-138)||(16841384-16841491)
[»] chr3 (1 HSPs)
chr3 (40-135)||(14554616-14554711)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 37430280 - 37430498
Alignment:
Q  6 gaggagcagagagaccaaaaaccaggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattg 105  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||    
T  37430280 gaggaacagtgagaccaaaaaccaggttgagatgaagtgttgataaaaaatgaattcttgaattgtaacaaggcagaactgtcatgatgcttgcacattg 37430379  T
Q  106 agaatgtataggaagtaaaatgagtaagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaatt 205  Q
    | |||||||||||||||||| |||| ||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37430380 aaaatgtataggaagtaaaaagagttagcagcatcaacaagaacaagtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaact 37430479  T
Q  206 atactctcttgtttaggat 224  Q
    |||||||||| || |||||    
T  37430480 atactctcttcttgaggat 37430498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 37698327 - 37698509
Alignment:
Q  17 agaccaaaaaccaggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtatag 116  Q
    |||||||| | ||||||||||  ||||||| |   |||||||||| |||||||||||||||||||||||||||| ||||||| | | ||||| ||| |||    
T  37698327 agaccaaatatcaggttgagacgaagtgttaactgaaaatgagtttttgaattgtaacaaggcagaactgtcatgatggttgcataatgagagtgtgtag 37698426  T
Q  117 gaagtaaaatgagtaagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 199  Q
    ||||||||||||||||||| || ||||        ||||||||||| |||||| ||||||| | |||||||||||||||||||    
T  37698427 gaagtaaaatgagtaagcaacaacaacaagaaaaagtgaaaggcaaaataaggcaatagaataaaaaaggaccccatttagag 37698509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 199
Target Start/End: Complemental strand, 37391544 - 37391385
Alignment:
Q  40 aagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagcagcat 139  Q
    ||||||||| |||||||||||| |||||||||| ||||||||| || |||| | ||||| ||| |||||  ||||||||||||||||||||||||| ||     
T  37391544 aagtgttgacaaaaaatgagtttttgaattgtagcaaggcagagctatcatgaaggttgcacaatgagagagtataggaagtaaaatgagtaagcaacaa 37391445  T
Q  140 caacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 199  Q
    ||||        |||||||| || |||||| |||| || | | |||||||||||||||||    
T  37391444 caacatgaacaagtgaaaggtaaaataaggcaataaaataaacaaggaccccatttagag 37391385  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 37595877 - 37595990
Alignment:
Q  30 ggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgag 129  Q
    ||||||||| ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  | |||| ||| |||||| || ||||||||||||||||    
T  37595877 ggttgagatgaagtgttgacagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacaatgagaaagtgtaggaagtaaaatgag 37595976  T
Q  130 taagcagcatcaac 143  Q
    ||||||||| ||||    
T  37595977 taagcagcaacaac 37595990  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 37641428 - 37641597
Alignment:
Q  30 ggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgag 129  Q
    |||| |||| ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  |||||| ||| |||||| || ||||||||||||||||    
T  37641428 ggtttagatgaagtgttgacagaaaaagagtttttgaattgtaacaaggcagaggtgtcatgttggttgcacagtgagaaagtgtaggaagtaaaatgag 37641527  T
Q  130 taagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 199  Q
    ||| || || ||||        |||||||| || |||||| ||| ||| | ||||||| |||||||||||    
T  37641528 taatcaacaacaacaacaagaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagag 37641597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 37713171 - 37713340
Alignment:
Q  30 ggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgag 129  Q
    ||||||||| ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  | |||| ||| |||||| || | ||||||||||||||    
T  37713171 ggttgagatgaagtgttgacagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgag 37713270  T
Q  130 taagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 199  Q
    |||||| || ||||        |||||||| || |||||| ||| ||| | ||||||| |||||||||||    
T  37713271 taagcaacaacaacgagaagaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagag 37713340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 37704208 - 37704323
Alignment:
Q  23 aaaaccaggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagta 122  Q
    |||||| |||| |||| ||||||||| | |||||||||  ||||||||||||||||| || || ||||  ||| || ||| |||||| || |||||||||    
T  37704208 aaaaccgggtttagatgaagtgttgacagaaaatgagtgtttgaattgtaacaaggcggagctatcatgttggctgcacaatgagaaagtgtaggaagta 37704307  T
Q  123 aaatgagtaagcagca 138  Q
    ||||||||||||||||    
T  37704308 aaatgagtaagcagca 37704323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 37411891 - 37411734
Alignment:
Q  58 agttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagcagcatcaacnnnnnnnggtgaaa 157  Q
    ||||||||||||||||||||||| | ||||||| || |||| | | |||||| || ||||||||||||||||||| ||||| ||||        ||||||    
T  37411891 agttcttgaattgtaacaaggcaaagctgtcatgatagttgcataatgagaaggtgtaggaagtaaaatgagtaaacagcagcaacaagaacaagtgaaa 37411792  T
Q  158 ggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaattatactctctt 215  Q
    || || ||| |  ||||||| | || |||||||||||||||| || ||| ||||||||    
T  37411791 ggtaaaataggacaatagaacaaaacaggaccccatttagagcaacttaaactctctt 37411734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 37825458 - 37825562
Alignment:
Q  28 caggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatg 127  Q
    |||||| |||| ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  | |||| ||| |||||| || ||||||||||||||    
T  37825458 caggtttagatgaagtgttgacagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtaggaagtaaaatg 37825557  T
Q  128 agtaa 132  Q
    |||||    
T  37825558 agtaa 37825562  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 199
Target Start/End: Original strand, 37534648 - 37534816
Alignment:
Q  31 gttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagt 130  Q
    |||||||| ||||| ||| | |||| ||||| ||||||||||||||||||||  ||||||  | |||| ||| |||||| || |||||||||||||||||    
T  37534648 gttgagatgaagtgctgacagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtaggaagtaaaatgagt 37534747  T
Q  131 aagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 199  Q
    || || || ||||        |||||||| || |||||| ||| ||| | ||||||| |||||||||||    
T  37534748 aatcaacaacaacaagaaaaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagag 37534816  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 37441518 - 37441599
Alignment:
Q  57 gagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagcagca 138  Q
    ||||| ||||||||||||||||||||  ||||||  | |||  ||| |||||| ||||||||||||||||||||||||||||    
T  37441518 gagtttttgaattgtaacaaggcagaggtgtcatgtttgtttcacagtgagaaagtataggaagtaaaatgagtaagcagca 37441599  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 37437248 - 37437417
Alignment:
Q  30 ggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgag 129  Q
    ||||||||| ||||||||| || ||| ||||| ||||||||||| ||||||||  |||||| ||||||| | | |||||| || | || |||||| ||||    
T  37437248 ggttgagatgaagtgttgagaagaaaagagtttttgaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgag 37437347  T
Q  130 taagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 199  Q
    |||||| || ||||        ||||| ||||| | |||| || |||| | |||||||||||||||||||    
T  37437348 taagcaacaacaacgagaacaagtgaagggcaaaacaaggcaaaagaataaaaaaggaccccatttagag 37437417  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 37380926 - 37380831
Alignment:
Q  40 aagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagca 135  Q
    ||||||||| | |||||||||| ||||| ||||||||||||||  | ||||  |||||| ||| |||||| || | ||||||||||||||||||||    
T  37380926 aagtgttgaaagaaaatgagtttttgaaatgtaacaaggcagatgtatcatgttggttgcacaatgagaaagtgtgggaagtaaaatgagtaagca 37380831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 37399396 - 37399314
Alignment:
Q  50 aaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaa 132  Q
    ||||||||| || ||||||||||||||||||||  |||||| ||||||| | | |||||| || || ||||||||||||||||    
T  37399396 aaaaaatgaatttttgaattgtaacaaggcagaggtgtcatgatggttgcatagtgagaaagtgtatgaagtaaaatgagtaa 37399314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 24216363 - 24216245
Alignment:
Q  17 agaccaaaaaccaggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtatag 116  Q
    |||||||| | | |||| |||| ||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||||| | | |||| | || ||     
T  24216363 agaccaaatatcgggttcagatgaagtgttgacaacaaatgagttcttgaattgtaacaatgcagaactgtcatgatggttgcagaatgagtaagtgtaa 24216264  T
Q  117 gaagtaaaatgagtaagca 135  Q
    |||||||||||||||||||    
T  24216263 gaagtaaaatgagtaagca 24216245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 16841491 - 16841384
Alignment:
Q  31 gttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagt 130  Q
    |||||||| ||||||||| | |||||||||| ||||| |||||||| ||||| |||||||  |||||| | | ||| || || |  |||||||| |||||    
T  16841491 gttgagatgaagtgttgacagaaaatgagtttttgaaatgtaacaaagcagagctgtcatgttggttgcagaatgacaaagtgtgtgaagtaaagtgagt 16841392  T
Q  131 aagcagca 138  Q
    ||||||||    
T  16841391 aagcagca 16841384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 14554616 - 14554711
Alignment:
Q  40 aagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagca 135  Q
    ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  |||||| ||| |||||| |||||||||||||||||||||||||    
T  14554616 aagtgttgacagaaaaagagtttttgaattgtaacaaggcagaggtgtcatgttggttgcacaatgagaaagtataggaagtaaaatgagtaagca 14554711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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