View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0517_high_6 (Length: 450)
Name: NF0517_high_6
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0517_high_6 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 28 - 435
Target Start/End: Original strand, 2193236 - 2193644
Alignment:
| Q |
28 |
aatccctaatcagaaatcaaatctagaatataccnnnnnnnnn-agccaagactgcaaattattttcatattaaatatccagcttttggttgttctacat |
126 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2193236 |
aatccctaatcagaaatcaaatctagaatataccttttttttttagccaagactgcacattattttcatattaaatatccagcttttggttgtgctacat |
2193335 |
T |
|
| Q |
127 |
ctagattgaaggccatggataaaagcatcagaattcataacataaaaaatgaggcagaaccttgttacctttccttggccatgctggaaatcgaaagcag |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193336 |
ctagattgaaggccatggataaaagcatcagaattcataacataaaaaatgaggcagaaccttgttacctttccttggccatgctggaaatcgaaagcag |
2193435 |
T |
|
| Q |
227 |
tataacaatcttaagtataaaaatatcaattactcatgtcagatagctaaaaggctcgttacaacttacctaacaacaaaataaaatgcctaaaggattc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193436 |
tataacaatcttaagtataaaaatatcaattactcatgccagatagctaaaaggctcgttacaacttacctaacaacaaaataaaatgcctaaaggattc |
2193535 |
T |
|
| Q |
327 |
atatttgaatgaagagaagtagaattcaaaatgtttttctgcatagagttataaaaatcgattttaccatgaaaaaactcttatcataatccagaaattc |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193536 |
atatttgaatgaagagaagtagaattcaaaatgtttttctgcatagagttataaaaatcgattttaccatgaaaaaactcttatcataatccagaaattc |
2193635 |
T |
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| Q |
427 |
aacatcaac |
435 |
Q |
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| T |
2193636 |
aacatcaac |
2193644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 372
Target Start/End: Complemental strand, 258551 - 258496
Alignment:
| Q |
317 |
taaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag |
372 |
Q |
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| T |
258551 |
taaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag |
258496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 14174513 - 14174568
Alignment:
| Q |
317 |
taaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag |
372 |
Q |
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|||||||||| ||||||||||||| ||||| |||||||||||||||| |||||| |
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| T |
14174513 |
taaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag |
14174568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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