View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0517_low_12 (Length: 299)
Name: NF0517_low_12
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0517_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 29 - 299
Target Start/End: Complemental strand, 30869906 - 30869636
Alignment:
| Q |
29 |
agatttcacgggatatgaagagtgtaggaggttagagatacttaatgagattaaggaagcatcagaaacatggggtttctttcaaatggtgaatcattgt |
128 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30869906 |
agatttcacaggatatgaagagtgtaggaggttagagatacttaatgagattaaggaagcatcagaaacatggggtttctttcaaatggtgaatcattgt |
30869807 |
T |
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| Q |
129 |
gttccagtttgtgttatggatgacatgttaaaggctataaaagagtttcatgagcaacctagtgaggtgaagaaagagtggtattcacgtgatcataagg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30869806 |
gttccagtttgtgttatggatgacatgttaaaggctataaaagagtttcatgagcaacctagtgaggtgaagaaagagtggtattcacgtgatcataagg |
30869707 |
T |
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| Q |
229 |
tgaaagttagatactttagtaatggtgatcttcttgttgctaaagcagctaattggagggataccattatt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30869706 |
tgaaagttagatactttagtaatggtgatcttcttgttgctaaagcagctaattggagggataccattatt |
30869636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 28736832 - 28736788
Alignment:
| Q |
81 |
aaggaagcatcagaaacatggggtttctttcaaatggtgaatcat |
125 |
Q |
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||||||||||| || |||||||||||||||||| |||| |||||| |
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| T |
28736832 |
aaggaagcatctgagacatggggtttctttcaagtggttaatcat |
28736788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 28743458 - 28743414
Alignment:
| Q |
81 |
aaggaagcatcagaaacatggggtttctttcaaatggtgaatcat |
125 |
Q |
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||||||||||| || |||||||||||||||||| |||| |||||| |
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| T |
28743458 |
aaggaagcatctgagacatggggtttctttcaagtggttaatcat |
28743414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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