View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0517_low_13 (Length: 281)
Name: NF0517_low_13
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0517_low_13 |
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| [»] scaffold0076 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 49020421 - 49020663
Alignment:
| Q |
12 |
agagatgacggagcttactggaatcaatgaaattaacccaaatgcattcatttgtgactttgcatttgatccttgtggatattcaatgaatggaatggat |
111 |
Q |
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| T |
49020421 |
agagatgacggagcttactggaatcaatgaaataaacccaaatgcattcatttgtgactttgcatttgatccttgtggatattcaatgaatggaatggat |
49020520 |
T |
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| Q |
112 |
gatgattggtattccaccattcatgttacaccagaagatggtttcagctatgcaagctttgaatgtgttgggtctgttaacgacaacatagtacatgtgt |
211 |
Q |
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| T |
49020521 |
gatgattggtattccaccattcatgttacaccagaagatggtttcagctatgcaagctttgaatgtgttgggtctgttaacgacaacatagtacatgtgt |
49020620 |
T |
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| Q |
212 |
taaggaaagttgttcagattttccgaccaggtactatgtctat |
254 |
Q |
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| T |
49020621 |
taaggaaagttgttcagattttccgaccaggtactatgtctat |
49020663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 7081392 - 7081223
Alignment:
| Q |
16 |
atgacggagcttactggaatcaatgaaattaacccaaatgcattcatttgtgactttgcatttgatccttgtggatattcaatgaatggaatggatgatg |
115 |
Q |
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| T |
7081392 |
atgacagaacttactggtataaatgaaatcaacaaagaagcattcatttgtgattttgcatttgatccttgtggctattcaatgaatggaatggatggag |
7081293 |
T |
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| Q |
116 |
attggtattccaccattcatgttacaccagaagatggtttcagctatgcaagctttgaatgtgttgggtc |
185 |
Q |
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| T |
7081292 |
aatgctattctaccattcatgtgactccggaagatggttatagctatgcaagctttgaatgtgtggggtc |
7081223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 4896 - 4942
Alignment:
| Q |
127 |
accattcatgttacaccagaagatggtttcagctatgcaagctttga |
173 |
Q |
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| T |
4896 |
accattcatgttactccagaagatgggttcagttatgcaagctttga |
4942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 5912407 - 5912517
Alignment:
| Q |
64 |
tgtgactttgcatttgatccttgtggatattcaatgaatggaatggatgatgattggtat-tccaccattcatgttacaccagaagatggtttcagctat |
162 |
Q |
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| T |
5912407 |
tgtgactttgaatttgaaccttgtgggtactcaatgaacggaattgaagga-agtgctatatccactatccatgtcaccccagaagatggattcagctat |
5912505 |
T |
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| Q |
163 |
gcaagctttgaa |
174 |
Q |
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| T |
5912506 |
gcaagctttgaa |
5912517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 362861 - 362820
Alignment:
| Q |
133 |
catgttacaccagaagatggtttcagctatgcaagctttgaa |
174 |
Q |
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| T |
362861 |
catgtcaccccagaagatgggttcagctatgcaagctttgaa |
362820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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