View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0517_low_15 (Length: 252)
Name: NF0517_low_15
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0517_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 14570159 - 14570382
Alignment:
| Q |
1 |
taaatttgttaccaataattattatgtttgtcacgtttttcatttatgattgtaccgttttagtttatattgtacgttatatttaatgcattcttattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14570159 |
taaatttgttaccaataattattatgtttgtcacgtttttcatttatgattgtaccgttttagtttatattgtacgttatatttaatgcattcttattat |
14570258 |
T |
|
| Q |
101 |
agtattttcaatattatctgttgtgctctttgtaatatttatcacttaagcaagttattccatttctacattttcatctacttaatttatttacaattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14570259 |
agtattttcaatattatctgttgtgctctttgtaatatttatcacttaagcaagttattccatttctacattttcatctacttaatttatttacaattaa |
14570358 |
T |
|
| Q |
201 |
atttctctattaatgataataatt |
224 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
14570359 |
atttctctattacggataataatt |
14570382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 19782148 - 19782360
Alignment:
| Q |
1 |
taaatttgttaccaataattattatgtttgtcacgtttttcatttatgattgtaccgttttagtttatattgtacgttatatttaatgcattcttattat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19782148 |
taaatttgttaccaataattattatgtttgtcatgtttttcatttatgattttaccgttttagtttatattgtacgttatatttaatgcattcttattat |
19782247 |
T |
|
| Q |
101 |
agtattttcaatattatctgttgtgctctttgtaatatttatcacttaagcaagttattccatttctacattttcatctacttaatttatttacaattaa |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
19782248 |
agtattttcaatattatatgttgtgctctttgtaatatttatcacttaagcaagttattccatttctacattttcatatacttaatttgtttacaattaa |
19782347 |
T |
|
| Q |
201 |
atttctctattaa |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19782348 |
atttctctattaa |
19782360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 54599058 - 54599021
Alignment:
| Q |
14 |
aataattattatgtttgtcacgtttttcatttatgatt |
51 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
54599058 |
aataattattatgtatgtcacgtttttcaattatgatt |
54599021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 547 times since January 2019
Visitors: 3653