View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0517_low_4 (Length: 469)

Name: NF0517_low_4
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0517_low_4
NF0517_low_4
[»] chr5 (29 HSPs)
chr5 (1-330)||(37430130-37430459)
chr5 (48-310)||(37704061-37704323)
chr5 (332-456)||(37429784-37429908)
chr5 (9-310)||(37698186-37698487)
chr5 (43-330)||(37595703-37595990)
chr5 (54-330)||(37641251-37641530)
chr5 (51-330)||(37712997-37713276)
chr5 (54-330)||(37534479-37534749)
chr5 (51-330)||(37437074-37437353)
chr5 (43-310)||(37411806-37412076)
chr5 (173-330)||(37825268-37825425)
chr5 (51-310)||(37380831-37381096)
chr5 (173-310)||(37399451-37399588)
chr5 (335-456)||(37399812-37399933)
chr5 (337-459)||(37412316-37412438)
chr5 (51-306)||(37391449-37391718)
chr5 (335-444)||(37391961-37392070)
chr5 (343-456)||(37595363-37595476)
chr5 (343-456)||(37640911-37641024)
chr5 (340-456)||(37703707-37703823)
chr5 (333-456)||(37712663-37712786)
chr5 (333-446)||(37436756-37436869)
chr5 (343-456)||(37534139-37534252)
chr5 (54-158)||(37825458-37825562)
chr5 (333-384)||(37381333-37381384)
chr5 (48-129)||(37441518-37441599)
chr5 (343-456)||(37697826-37697939)
chr5 (343-456)||(37824934-37825047)
chr5 (54-136)||(37399314-37399396)
[»] chr4 (4 HSPs)
chr4 (51-306)||(24216245-24216500)
chr4 (48-310)||(16841384-16841637)
chr4 (337-429)||(24216748-24216840)
chr4 (337-380)||(16841878-16841921)
[»] chr3 (3 HSPs)
chr3 (173-310)||(14554425-14554562)
chr3 (51-146)||(14554616-14554711)
chr3 (333-456)||(14554077-14554200)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 37430459 - 37430130
Alignment:
Q  1 cttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgac 100  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||| |||| |||||||||||||||||| ||||||| ||| ||| |||||    
T  37430459 cttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaagcatcatgac 37430360  T
Q  101 agttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaat 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37430359 agttctgccttgttacaattcaagaattcattttttatcaacacttcatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaat 37430260  T
Q  201 cttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaa 300  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37430259 cttggaaaaccggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtctggaccttagttgcaacaatctgaa 37430160  T
Q  301 cggtgaattaacgaccaatagcaccatctt 330  Q
    |||||||||| || ||||||||||||||||    
T  37430159 cggtgaattagcggccaatagcaccatctt 37430130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 48 - 310
Target Start/End: Complemental strand, 37704323 - 37704061
Alignment:
Q  48 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactta 147  Q
    ||||||||||||||||||||||||| || |||||| ||| || |||  |||| || || |||||||||||||||||  ||||||||| | |||||||||     
T  37704323 tgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttc 37704224  T
Q  148 atctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgc 247  Q
    |||| |||| ||||||  ||||   ||||  ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  37704223 atctaaacccggttttctgtctatgtgtttgtctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgc 37704124  T
Q  248 gacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaatta 310  Q
    |||| | |||  ||| | |||||||||||||| || ||||||||||||||||| |||||||||    
T  37704123 gacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctgaaaggtgaatta 37704061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 332 - 456
Target Start/End: Complemental strand, 37429908 - 37429784
Alignment:
Q  332 gtccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtc 431  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37429908 gtccactcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatctttaatcagagagagatctttgtc 37429809  T
Q  432 gctgctaaggaatttatcgtcctct 456  Q
    |||||||||||||||||||||||||    
T  37429808 gctgctaaggaatttatcgtcctct 37429784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 37698487 - 37698186
Alignment:
Q  9 ttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgc 108  Q
    ||||||| |||||| |||||||||||        |||| || |||||||||||||||||||||| ||| ||||| | | ||||||| |||||||||||||    
T  37698487 ttctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaaccatcatgacagttctgc 37698388  T
Q  109 cttgttacaattcaagaactcattttttatcaacacttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaa 208  Q
    ||||||||||||||| ||||||||||   | |||||||  |||||||||| | ||||||||   |||||||||||||||| || ||||||||||||||||    
T  37698387 cttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtctagatgttcctctttttcttccaggacagaatcttggaaa 37698288  T
Q  209 actggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaat 308  Q
    |     |||||||| ||| ||||||||||||||||||| ||||    ||  ||||| ||||||||||||||||| |||||||||||| |||| |||||||    
T  37698287 aacaatacagattgttgcaagtgggatggtgtcacgtgtgacactgagtcggattacgtgattggtttggacctcagttgcaacaatttgaaaggtgaat 37698188  T
Q  309 ta 310  Q
    ||    
T  37698187 ta 37698186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 43 - 330
Target Start/End: Complemental strand, 37595990 - 37595703
Alignment:
Q  43 gttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaac 142  Q
    |||| ||||||||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | |||||    
T  37595990 gttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaac 37595891  T
Q  143 acttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtca 242  Q
    |||| |||||||||   |   |  | |   ||||||||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||    
T  37595890 acttcatctcaacccaatccgtactttggttgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtca 37595791  T
Q  243 cgtgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 330  Q
    ||||||||| |||||  ||| | ||||||||| ||||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37595790 cgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaacaatcttaaaggtgaattacatcccaatagcaccatctt 37595703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 54 - 330
Target Start/End: Complemental strand, 37641530 - 37641251
Alignment:
Q  54 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctca 153  Q
    ||||||||||||||||||| || |||||| ||| ||||||  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| |    
T  37641530 ttactcattttacttcctacactttctcactgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaa 37641431  T
Q  154 acctgg---tttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgac 250  Q
    ||| |    | ||| ||||   ||| |||||||||||||||||||||||||||||||||     |||||||| || ||||||||||||||||||||||||    
T  37641430 accggacgatattttgtctagttgtccctctttttctttcaagacagaatcttggaaaaacaatacagattgttgtgagtgggatggtgtcacgtgcgac 37641331  T
Q  251 atcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 330  Q
    | |||||  ||| | ||||||||| ||||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37641330 accatgtcagatcacgtgattggtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt 37641251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 51 - 330
Target Start/End: Complemental strand, 37713276 - 37712997
Alignment:
Q  51 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 150  Q
    |||||||||||||||||||| | || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||    
T  37713276 tgcttactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatc 37713177  T
Q  151 tcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgac 250  Q
    ||||||   |   |  | |   ||||||||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||    
T  37713176 tcaacccaatccgtactttggttgttcctctttttctttcaagacagaatcttggcaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgac 37713077  T
Q  251 atcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 330  Q
    | |||||  ||| | ||||||||| ||||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37713076 accatgtcagatcacgtgattggtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt 37712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 330
Target Start/End: Complemental strand, 37534749 - 37534479
Alignment:
Q  54 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctca 153  Q
    ||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||| ||||| ||||||    
T  37534749 ttactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctca 37534650  T
Q  154 acctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatc 253  Q
    || |   |||||  |     |||| ||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||| |    
T  37534649 ac-tctattttgcgc-----gttcttctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacacc 37534556  T
Q  254 atgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 330  Q
    ||||  ||| | ||||||||| ||||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37534555 atgtcagatcacgtgattggtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt 37534479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 51 - 330
Target Start/End: Complemental strand, 37437353 - 37437074
Alignment:
Q  51 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 150  Q
    |||||||||| |||||| || | || |||||| | | ||||||| ||||||  |||||||| ||||||||||| ||||| ||| || ||||||||| |||    
T  37437353 tgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatc 37437254  T
Q  151 tcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgac 250  Q
    ||||||   |   |  | |   |||| |||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||    
T  37437253 tcaacccaatccgtactttggttgtttctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgac 37437154  T
Q  251 atcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 330  Q
    | |||||  ||| | ||||||||| ||||||| ||||||||||||||||| |||||||||    ||||||||||||||||    
T  37437153 accatgtcagatcacgtgattggtctggacctcagttgcaacaatctgaaaggtgaattacatcccaatagcaccatctt 37437074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 43 - 310
Target Start/End: Original strand, 37411806 - 37412076
Alignment:
Q  43 gttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaa- 141  Q
    |||| ||||| ||||||||||||||||||| || |||||| | | |||| || ||||||| | ||||||||||||||||||||||| | || || ||||     
T  37411806 gttgctgctgtttactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaat 37411905  T
Q  142 --cacttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtg 239  Q
      || || |||||| | || | ||||| ||   ||||||||||||||||| || ||||| |||||||||| |   |||||||| ||||||||| ||||||    
T  37411906 ggcatttcatctcagcatgatatttggcctagttgttcctctttttctttgaaaacagattcttggaaaaataatacagattgttgcgagtggtatggtg 37412005  T
Q  240 tcacgtgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaatta 310  Q
    ||| |||||||| | | |  ||| |||||||||||||||||||||| ||||||||||| || |||||||||    
T  37412006 tcatgtgcgacaccgttttggatcatgtgattggtttggaccttaggtgcaacaatcttaaaggtgaatta 37412076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 173 - 330
Target Start/End: Complemental strand, 37825425 - 37825268
Alignment:
Q  173 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 272  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||| |||||  ||| | |||||||    
T  37825425 tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg 37825326  T
Q  273 gtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 330  Q
    || ||||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37825325 gtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt 37825268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 310
Target Start/End: Original strand, 37380831 - 37381096
Alignment:
Q  51 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 150  Q
    |||||||||||||||||||| | || |||||| ||| ||||||  |||| |  |||||||||||||| ||||| |||||||||| | ||||||||| |||    
T  37380831 tgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactcattttctttcaacacttcatc 37380930  T
Q  151 tcaacctggt------ttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacg 244  Q
      || | | |      |||||| ||   |||||| ||||||||||||||| |||||||||||||| |   |||||||| || | ||||||||||||||||    
T  37380931 gaaatccgatatacatttttggcctagatgttccactttttctttcaagatagaatcttggaaaaataatacagattgttgtgggtgggatggtgtcacg 37381030  T
Q  245 tgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaatta 310  Q
    ||||||  |||||  ||| ||||||||||| ||||||| ||||||| ||||||||| |||||||||    
T  37381031 tgcgactccatgtcagatcatgtgattggtctggacctcagttgcagcaatctgaatggtgaatta 37381096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 37399451 - 37399588
Alignment:
Q  173 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 272  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||| |||||  ||| | |||||||    
T  37399451 tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg 37399550  T
Q  273 gtttggaccttagttgcaacaatctgaacggtgaatta 310  Q
    || ||||||| ||||||||||| || || |||||||||    
T  37399551 gtctggacctcagttgcaacaaactaaaaggtgaatta 37399588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 335 - 456
Target Start/End: Original strand, 37399812 - 37399933
Alignment:
Q  335 cattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgct 434  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | || |||||  |||||||||| ||||||||  |    
T  37399812 cattgacatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatattgtgaacatgtcttccctcagagagagctctttgtcaat 37399911  T
Q  435 gctaaggaatttatcgtcctct 456  Q
    ||||| |||||| || ||||||    
T  37399912 gctaaagaatttgtcatcctct 37399933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 337 - 459
Target Start/End: Original strand, 37412316 - 37412438
Alignment:
Q  337 ttcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgc 436  Q
    |||||||||||| ||||||||| ||||| ||| |||||||| ||||||||| |||||| ||| ||||| ||||| ||||||||||  |||||||||||||    
T  37412316 ttcacatggaaggaactcattcataatgttacaaatttaagcgagcttcatctgaatagtgttgatatgtcttccatcagagagaattctttgtcgctgc 37412415  T
Q  437 taaggaatttatcgtcctctctg 459  Q
    ||| |||||| || |||||||||    
T  37412416 taaagaatttgtcatcctctctg 37412438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 37391449 - 37391718
Alignment:
Q  51 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 150  Q
    |||||||||||||||||||||||||  ||||| ||| ||||| | |||| || ||||||||| |||||||||| |||||||||||| ||||||||| |||    
T  37391449 tgcttactcattttacttcctatactctctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatc 37391548  T
Q  151 tcaacctgg---tttttggtctcac-----------tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatg 236  Q
      |||||     |||||  | |||            |||||||||||||||||||||||||||||||||||||   | ||| |||| ||| |||||||||    
T  37391549 aaaacctatccttttttaatttcaaactttggttggtgttcctctttttctttcaagacagaatcttggaaaaacagtacaaattgttgcaagtgggatg 37391648  T
Q  237 gtgtcacgtgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtga 306  Q
    ||||||||||||||| |||||  ||| | |||||||   | ||||| |||||||||||| |||| |||||    
T  37391649 gtgtcacgtgcgacaccatgtcagatcacgtgattgaactagacctcagttgcaacaatttgaatggtga 37391718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 335 - 444
Target Start/End: Original strand, 37391961 - 37392070
Alignment:
Q  335 cattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgct 434  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| | ||| || |||||||| ||||||||  |    
T  37391961 cattgacatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagagtggatatgtattccattagagagagctctttgtctat 37392060  T
Q  435 gctaaggaat 444  Q
    ||||| ||||    
T  37392061 gctaaagaat 37392070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 456
Target Start/End: Complemental strand, 37595476 - 37595363
Alignment:
Q  343 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 442  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |  ||||| ||||||||  |||||| ||    
T  37595476 tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtccatgctaaaga 37595377  T
Q  443 atttatcgtcctct 456  Q
    |||| || ||||||    
T  37595376 atttttcatcctct 37595363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 456
Target Start/End: Complemental strand, 37641024 - 37640911
Alignment:
Q  343 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 442  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |  ||||| ||||||||  |||||| ||    
T  37641024 tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtcaatgctaaaga 37640925  T
Q  443 atttatcgtcctct 456  Q
    |||| || ||||||    
T  37640924 atttgtcatcctct 37640911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 456
Target Start/End: Complemental strand, 37703823 - 37703707
Alignment:
Q  340 acatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaa 439  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |  ||||| || |||||  ||||||    
T  37703823 acatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctcattgtcaatgctaa 37703724  T
Q  440 ggaatttatcgtcctct 456  Q
     |||||| || ||||||    
T  37703723 agaatttgtcatcctct 37703707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 456
Target Start/End: Complemental strand, 37712786 - 37712663
Alignment:
Q  333 tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg 432  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||| |||| | || ||||| ||||||||||| ||||||||     
T  37712786 tccattgacatggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtca 37712687  T
Q  433 ctgctaaggaatttatcgtcctct 456  Q
     |||||| |||||| || ||||||    
T  37712686 atgctaaagaatttgtcatcctct 37712663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 446
Target Start/End: Complemental strand, 37436869 - 37436756
Alignment:
Q  333 tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg 432  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||   ||| | || ||||||||  ||||||| |||||||||    
T  37436869 tccattcgcatggaagaaactcattcataatgctactaatttaagggagcttcatctgaatggagtgaaaatgtcttcaattggagagagctctttgtcg 37436770  T
Q  433 ctgctaaggaattt 446  Q
     || ||| ||||||    
T  37436769 ttgttaacgaattt 37436756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 343 - 456
Target Start/End: Complemental strand, 37534252 - 37534139
Alignment:
Q  343 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 442  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||| ||| |||| | || ||||| ||||||||||| ||||||||  |||||| ||    
T  37534252 tggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaaga 37534153  T
Q  443 atttatcgtcctct 456  Q
    |||| || ||||||    
T  37534152 atttgtcatcctct 37534139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 37825562 - 37825458
Alignment:
Q  54 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctca 153  Q
    ||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| |    
T  37825562 ttactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaa 37825463  T
Q  154 acctg 158  Q
    |||||    
T  37825462 acctg 37825458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 37381333 - 37381384
Alignment:
Q  333 tccattcacatggaagaaactcattcttaatgctactaatttaagggagctt 384  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  37381333 tccattgacatggaagaaactcattcataatgctactaatttaagggagctt 37381384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 37441599 - 37441518
Alignment:
Q  48 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactc 129  Q
    |||||||||||||||||||||||||||| |||||| |||  ||| |  ||||||  |||||||||||||||||||| |||||    
T  37441599 tgctgcttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc 37441518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 456
Target Start/End: Complemental strand, 37697939 - 37697826
Alignment:
Q  343 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 442  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| | |||   ||| | || ||||||||| ||||||| || |||||  |||||| ||    
T  37697939 tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga 37697840  T
Q  443 atttatcgtcctct 456  Q
    |||| || ||||||    
T  37697839 atttgtcatcctct 37697826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 456
Target Start/End: Complemental strand, 37825047 - 37824934
Alignment:
Q  343 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 442  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| | |||   ||| | || ||||||||| ||||||| || |||||  |||||| ||    
T  37825047 tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga 37824948  T
Q  443 atttatcgtcctct 456  Q
    |||| || ||||||    
T  37824947 atttgtcatcctct 37824934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 37399314 - 37399396
Alignment:
Q  54 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcatttttt 136  Q
    |||||||||||||||| || || |||||| | | ||||||| ||||||  |||||||||||||||||||| || |||||||||    
T  37399314 ttactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattcatttttt 37399396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 24216245 - 24216500
Alignment:
Q  51 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 150  Q
    ||||||||||||||||||| || || | |||| | | ||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||| |||    
T  24216245 tgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 24216344  T
Q  151 tcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgac 250  Q
    | |||| | | ||||||||   |||||| |||||| ||||| ||| ||||| ||||||| |||  ||||||| |||||||||||||| |||| ||| |||    
T  24216345 tgaacccgatatttggtctatgtgttccactttttatttcaggacggaatcctggaaaaatggtgcagattgttgcgagtgggatggggtcatgtgtgac 24216444  T
Q  251 atcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtga 306  Q
    |  | ||   |||| ||||||||| ||||||||||||||||||||||||| |||||    
T  24216445 actaggtcaaattacgtgattggtctggaccttagttgcaacaatctgaaaggtga 24216500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 48 - 310
Target Start/End: Original strand, 16841384 - 16841637
Alignment:
Q  48 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactta 147  Q
    ||||||||||||| ||||||||  | || || ||| | | ||||||  ||||||| ||||| |||||||| ||||| |||||||||| | |||||||||     
T  16841384 tgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttc 16841483  T
Q  148 atctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgc 247  Q
    |||||||| || | ||||         |||||||  ||||||||||||| ||||||||||||  || || ||||| ||| |||||||||||||||||||     
T  16841484 atctcaacttgatatttg---------ttcctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgt 16841574  T
Q  248 gacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaatta 310  Q
    ||||     |  ||||| ||| ||||||||||||| |||||||||||| |||| |||||||||    
T  16841575 gacactgaatcagattacgtggttggtttggacctcagttgcaacaatttgaaaggtgaatta 16841637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 24216748 - 24216840
Alignment:
Q  337 ttcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttg 429  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |  |||||   ||||| |||||||||||||||||||| ||||||    
T  24216748 ttcacatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacatatcttcaatcagagagagctctttg 24216840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 16841878 - 16841921
Alignment:
Q  337 ttcacatggaagaaactcattcttaatgctactaatttaaggga 380  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  16841878 ttcacttggaagaaactcattcataatgctactaaattaaggga 16841921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 310
Target Start/End: Complemental strand, 14554562 - 14554425
Alignment:
Q  173 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 272  Q
    |||| ||||||||||||||||||||||||||||||||   | |||||||| |||||||||||||||||||||||||||| ||| |  | | | |||||||    
T  14554562 tgtttctctttttctttcaagacagaatcttggaaaaagagtacagattgttgcgagtgggatggtgtcacgtgcgacaccatatcaggtcacgtgattg 14554463  T
Q  273 gtttggaccttagttgcaacaatctgaacggtgaatta 310  Q
       | |||||||||||||||||| |||| |||||||||    
T  14554462 aactagaccttagttgcaacaatttgaatggtgaatta 14554425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 14554711 - 14554616
Alignment:
Q  51 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 146  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||  ||||||  |||||||||||||||||||| ||||| |||| | |||||||||    
T  14554711 tgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacactt 14554616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 456
Target Start/End: Complemental strand, 14554200 - 14554077
Alignment:
Q  333 tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg 432  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||||| ||| || |||||   ||| | || ||||| ||||||||||| ||||||||     
T  14554200 tccatttacatggaataaactcattcataatgctactaatttaagggatctttatctgaatggagtgaacatgtcttccatcagagagagctctttgtca 14554101  T
Q  433 ctgctaaggaatttatcgtcctct 456  Q
     |||||| |||||| || ||||||    
T  14554100 atgctaaagaatttgtcatcctct 14554077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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