View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0517_low_7 (Length: 416)
Name: NF0517_low_7
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0517_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 35174139 - 35174366
Alignment:
| Q |
29 |
aaaaccagacgtagttgaaccacagttttccacaaatgccacacaaaaggcaaagccgagccagttgtcaaactcatttgtaaagtctgatatctttatt |
128 |
Q |
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| T |
35174139 |
aaaaccagacgtagttgaaccacagttttccacaaatgccacacaaaaggcaaagccgagccagttgtcaaactcatttgtaaagtctgatatctttatt |
35174238 |
T |
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| Q |
129 |
attgaatttcccgtaaattgatgattaaaccattctggaattatctccccaggaacaacaatgtcaaagccacaacggaaatgatgaggattctgcagaa |
228 |
Q |
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| T |
35174239 |
attgaatttcccgtaaattgatgattaaaccattctggaattttctccccaggaacaacaatgtcaaaaccacaccggaaatgatgaggattctgcagaa |
35174338 |
T |
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| Q |
229 |
gatgaaaataacacaaatttatcagtac |
256 |
Q |
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| T |
35174339 |
gatgaaaataacacaaatttatcagtac |
35174366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 294 - 406
Target Start/End: Original strand, 35174402 - 35174511
Alignment:
| Q |
294 |
tatcaagtgtgcacctcaactaatctctctagccatgaaagtgccaagctttgacctccttctgcgatctccaagaggggacagcagttgaaaatatata |
393 |
Q |
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| T |
35174402 |
tatcaagtgtgcacctcaactaatctctctagccatgaaagtgccaagctttgacctccttctgcgatctccaagagggga---cagttgaaaatatata |
35174498 |
T |
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| Q |
394 |
atcctgacctatg |
406 |
Q |
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| T |
35174499 |
atcctgacctatg |
35174511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 35073511 - 35073692
Alignment:
| Q |
43 |
ttgaaccacagttttccacaaatgccacacaaaaggcaaagccgagccagttgtcaaactcatttgtaaagtctgatatctttattattgaatttcccgt |
142 |
Q |
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| T |
35073511 |
ttgaaccacagttttccatgaataccacacaaaaggcaaagccaagccaattgttattcttattagtaaagtttgttatccttaatcttgaatttccttt |
35073610 |
T |
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| Q |
143 |
aaattgatgattaaaccattctggaattatctccccaggaacaacaatgtcaaagccacaacggaaatgatgaggattctgc |
224 |
Q |
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| T |
35073611 |
aaattgatgatcaaaccactctggaattatatcaccaggaacaacaatgtcaaagccacaccggaaatgatgaggactctgc |
35073692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 35050844 - 35051010
Alignment:
| Q |
54 |
ttttccacaaatgccacacaaaaggcaaagccgagccagttgtcaaactcatttgtaaagtctgatatctttattattgaatttcccgtaaattgatgat |
153 |
Q |
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||||||||||||||||| |||||||||||||| ||||| |||||||||| || || |||||| |||||||| | |||||||||| | ||||||||||| |
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| T |
35050844 |
ttttccacaaatgccacgcaaaaggcaaagccaagccaattgtcaaacttat---tatagtctgttatctttactcttgaatttcctgcaaattgatgat |
35050940 |
T |
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| Q |
154 |
taaaccattctggaattatctccccaggaacaacaatgtcaaagccacaacggaaatgatgaggattctg |
223 |
Q |
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|||||| ||||||| | || |||||||||||||||| |||||| ||||||||| ||||||||| |
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| T |
35050941 |
caaaccacagtggaattgtgtcggacggaacaacaatgtcaaggccacagcggaaatgacaaggattctg |
35051010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 35051171 - 35051199
Alignment:
| Q |
378 |
cagttgaaaatatataatcctgacctatg |
406 |
Q |
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| T |
35051171 |
cagttgaaaatatataatcctgacctatg |
35051199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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