View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0517_low_8 (Length: 390)
Name: NF0517_low_8
Description: NF0517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0517_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 50749823 - 50749476
Alignment:
| Q |
14 |
agacacaatagataactagctggccaactgtaaatgctttcccttgatcaccagtagaagctatcactcttctccctgtgaacaatgcagttgcctcgta |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50749823 |
agacacaatagatgactagctggccaactgtaaatgctttcccttgatcaccagtagaagctatcactcttctccctgtgaacaatgcagttgcctcgta |
50749724 |
T |
|
| Q |
114 |
cgcagttaccccaactgcgattgggatctgcatatgtaacatgattcaaactttttccgatatttttgtaacttgtaacatacattcaaatacaaattca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50749723 |
cgcagttaccccaactgcgattgggatctgcatatgtaacatgattcaaactttttctgatatttttgtaacttgtaacatacattcaaatacaaattca |
50749624 |
T |
|
| Q |
214 |
taaaagttgggtgacaatgagatatcatgttcagttaaaaagcaaaaccacaagagttatatttacctgtaacaagttcagtatccaatatgctgcagaa |
313 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50749623 |
taaaagttgagtgacaatgagatatcatgttcaattaaaaagcaaaaccacaagagttaaatttacctgtaacaagttcagtatccaatatgctgcagaa |
50749524 |
T |
|
| Q |
314 |
catgtagttgtgtagttttgctgtcaacaggaggcttgaattaattga |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50749523 |
catgtagttgtgtagttttgctgtcaacaggaggcttgaattaattga |
50749476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 50813007 - 50813361
Alignment:
| Q |
14 |
agacacaatagataactagctggccaactgtaaatgctttcccttgatcaccagtagaagctatcactcttctccctgtgaacaatgcagttgc-----c |
108 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
50813007 |
agacacaatagatgattagcaggccaactgtaaatgctttcccttgatcaccagcagaagctatcactcttctctgtgtgaacaatgcagttgctttgcc |
50813106 |
T |
|
| Q |
109 |
tcgtacgcagttaccccaactgcgattgggatctgcatatgtaaca---------tgattcaaactttttccgatatttttgtaacttgtaacatacatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50813107 |
tcgtacgcagttaccccaactgcgattagtatctgcatatgtaacatataaaacatgattcaaactttttccgatatttttgtaacttgtaacatacatt |
50813206 |
T |
|
| Q |
200 |
caaatacaaattcataaaagttgggtgacaatgagatatcatgttcagtta--aaaagcaaaaccacaagagttatatttacctgtaacaagttcagt-- |
295 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||| | | |||| ||| ||||| |||| || ||||||||||||||| |||||| |
|
|
| T |
50813207 |
caaatacaaattcataaaagttgagtgacaatgagatataatgttcaatcaagaaaaacaataccactagaggtaaatttacctgtaacaaattcagtac |
50813306 |
T |
|
| Q |
296 |
----atccaatatgctgcagaacatgtagttgtgtagttttgctgtcaacaggag |
346 |
Q |
| |
|
| ||||||||| |||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
50813307 |
cccaacccaatatgccgcagaacatgcagttgtgtagttttgctgtcaataggag |
50813361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 50862857 - 50862503
Alignment:
| Q |
14 |
agacacaatagataactagctggccaactgtaaatgctttcccttgatcaccagtagaagctatcactcttctccctgtgaacaatgcagttgc-----c |
108 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
50862857 |
agacacaatagatgattagcaggccaactgtaaatgctttcccttgatcaccagcagaagctatcactcttctctgtgtgaacaatgcagttgctttgcc |
50862758 |
T |
|
| Q |
109 |
tcgtacgcagttaccccaactgcgattgggatctgcatatgtaacat---------gattcaaactttttccgatatttttgtaacttgtaacatacatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50862757 |
tcgtacgcagttaccccaactgcgattagtatctgcatatgtaacatataaaacatgattcaaactttttccgatatttttgtaacttgtaacatacatt |
50862658 |
T |
|
| Q |
200 |
caaatacaaattcataaaagttgggtgacaatgagatatcatgttcagtta--aaaagcaaaaccacaagagttatatttacctgtaacaagttcagt-- |
295 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||| | | |||| ||| ||||| |||| || ||||||||||||||| |||||| |
|
|
| T |
50862657 |
caaatacaaattcataaaagttgagtgacaatgagatataatgttcaatcaagaaaaacaataccactagaggtaaatttacctgtaacaaattcagtac |
50862558 |
T |
|
| Q |
296 |
----atccaatatgctgcagaacatgtagttgtgtagttttgctgtcaacaggag |
346 |
Q |
| |
|
| ||||||||| |||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
50862557 |
cccaacccaatatgccgcagaacatgcagttgtgtagttttgctgtcaataggag |
50862503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1240 times since January 2019
Visitors: 3642