View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0518_low_1 (Length: 465)
Name: NF0518_low_1
Description: NF0518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0518_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 45144998 - 45144682
Alignment:
| Q |
21 |
agtattccagataaagagcctattattcctgcattactaaacaaaatatcgatgcaaccgtgtttttccaaagtgaaatgaattgtttcttcgacttgtt |
120 |
Q |
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| T |
45144998 |
agtattccagataaagagcctattattcctgcattactaaacaaaatatcgatgcaaccgtgtttttccaaagtgaaatgaattgtttcttcgacttgtt |
45144899 |
T |
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| Q |
121 |
tttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaactttatgacccaattcatcttgaatgtctactgcaataac |
220 |
Q |
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| T |
45144898 |
tttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaactttatgacccaattcatcttgaatgtctactgcaataac |
45144799 |
T |
|
| Q |
221 |
aaatgctccattttcggcgaacaatttcactgtttcttcaccaattccactggctgcacctgttattattgccaccttaccctccaacctaaattttgtc |
320 |
Q |
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| T |
45144798 |
aaatgctccattttcggcgaacaatttcactgtttcttcaccaattccactggctgcacctgttattattgccaccttaccctccaacctaaattttgtc |
45144699 |
T |
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| Q |
321 |
ataatatattatgcaag |
337 |
Q |
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| T |
45144698 |
ataatatattatgcaag |
45144682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 45144616 - 45144558
Alignment:
| Q |
403 |
ctactatagagaaaatacaaaggattgaattagagacatatatagggtacctttgcttc |
461 |
Q |
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| T |
45144616 |
ctactatagagaaaatacaaaggattgaattagagacatatatagggtacctttgcttc |
45144558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 45141584 - 45141489
Alignment:
| Q |
104 |
tgtttcttcgacttgtttttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaactttatgacccaattcatc |
199 |
Q |
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| T |
45141584 |
tgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatc |
45141489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 45152226 - 45152132
Alignment:
| Q |
105 |
gtttcttcgacttgtttttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaactttatgacccaattcatc |
199 |
Q |
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| T |
45152226 |
gtttcctcaacttgtttttcatcactcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatc |
45152132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 81 - 314
Target Start/End: Original strand, 12701200 - 12701432
Alignment:
| Q |
81 |
tgtttttccaaagtgaaatgaattgtttcttcgacttgtttttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaa |
180 |
Q |
| |
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||||||||||||||||||| || |||||||| || |||||||| | | | | || |||||||||||||| ||||| | ||| ||||||||| | ||| |
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| T |
12701200 |
tgtttttccaaagtgaaattaacagtttcttcaacctgtttttcatgc-taatgtcgcaatgatggtatgtcactttatttgaacctattgaagatacaa |
12701298 |
T |
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| Q |
181 |
ctttatgacccaattcatcttgaatgtctactgcaataacaaatgctccattttcggcgaacaatttcactgtttcttcaccaattccactggctgcacc |
280 |
Q |
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||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
12701299 |
cttgatgacctaattcatcttgaatgtctactgcaacaacaaatgctccattttcgacgaacaacttcactgcgtctttaccaattccactggctgcacc |
12701398 |
T |
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| Q |
281 |
tgttattattgccaccttaccctccaacctaaat |
314 |
Q |
| |
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|| || ||||| | ||||||||| ||||||||| |
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| T |
12701399 |
agtgatgattgctatcttaccctctaacctaaat |
12701432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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