View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0518_low_10 (Length: 289)
Name: NF0518_low_10
Description: NF0518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0518_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 46833900 - 46833667
Alignment:
| Q |
29 |
atgaagaatggacatgtataaggtttgagtaaataaaaaa-------tgaacttacttagaggatgataatgaaaagcgcttcccaggctggcgttggcg |
121 |
Q |
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| T |
46833900 |
atgaagaatgaaaatgtataaggtttgagtaaaaaaaaaaaaaaaaatgaacttacttagaggatgataatgaaaagcgcttcccaggctggcgttggcg |
46833801 |
T |
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| Q |
122 |
acaagcatacaaatcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaaggatgatca |
221 |
Q |
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| T |
46833800 |
acaagcatacaaatcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaaggatgatca |
46833701 |
T |
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| Q |
222 |
agcatccctaaaatctccttctccatctctgctc |
255 |
Q |
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| T |
46833700 |
agcatccctaaaatctccttctccatctctgctc |
46833667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 6073362 - 6073458
Alignment:
| Q |
131 |
caaatcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaaggatgatcaagcatc |
227 |
Q |
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| T |
6073362 |
caaatctccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactaggaagaaaaggatgatcaagcatc |
6073458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 37170406 - 37170315
Alignment:
| Q |
135 |
tcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaaggatgatcaagcat |
226 |
Q |
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| T |
37170406 |
tcaccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcgtagagtgtaggaagaaaaggatgatcaagcat |
37170315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 12235244 - 12235276
Alignment:
| Q |
138 |
ccaccaggacaaaactccataaccaaacaagag |
170 |
Q |
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| T |
12235244 |
ccaccaggacaaaactccataaccaagcaagag |
12235276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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