View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0518_low_3 (Length: 383)
Name: NF0518_low_3
Description: NF0518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0518_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 29 - 373
Target Start/End: Complemental strand, 4756982 - 4756638
Alignment:
| Q |
29 |
acaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaa |
128 |
Q |
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| T |
4756982 |
acaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaa |
4756883 |
T |
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| Q |
129 |
ctcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagaccaatataagttgacaatgcttcgtcaccatttatg |
228 |
Q |
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| T |
4756882 |
ctcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagactaatataagttgacaatgcttcgtcaccatttatg |
4756783 |
T |
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| Q |
229 |
ggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaa |
328 |
Q |
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| T |
4756782 |
ggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaa |
4756683 |
T |
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| Q |
329 |
ccttgagattctcttcgtcggttagaaccttacgacatgtctctg |
373 |
Q |
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| T |
4756682 |
ccttgagattctcttcgtcggttagaaccttacgacatgtctctg |
4756638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 373
Target Start/End: Complemental strand, 4749136 - 4748803
Alignment:
| Q |
37 |
tcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatg |
136 |
Q |
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||||||||| ||||||| | || ||||||||||| |||| ||||| | ||||||||| ||||||| |||||| | |||||| ||||||||| | |
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| T |
4749136 |
tcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaactttttggcctctttgagaaactcaaccg |
4749037 |
T |
|
| Q |
137 |
gtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagaccaatataagttgacaatgcttcgtcaccatttatgggagaagt |
236 |
Q |
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|||||||| |||||||| | |||||||||| |||||| || |||| || ||||||||||||||| | |||| ||||| ||||||||| ||||| || |
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| T |
4749036 |
gtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaa---ttcgtgaccatttattggagacgt |
4748940 |
T |
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| Q |
237 |
gattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgaga |
336 |
Q |
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| ||| || ||||||||| || || | | |||| ||||||||||||||| |||| |||| ||| |||| | |||| ||||||||| ||||||| |
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| T |
4748939 |
ggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaagcagggtatcctggcttgaga |
4748840 |
T |
|
| Q |
337 |
ttctcttcgtcggttagaaccttacgacatgtctctg |
373 |
Q |
| |
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| || ||||| |||| || |||||||||||||||| |
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| T |
4748839 |
tgttcctcgtcttttagtacattacgacatgtctctg |
4748803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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