View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0518_low_6 (Length: 302)
Name: NF0518_low_6
Description: NF0518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0518_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 21926629 - 21926753
Alignment:
| Q |
53 |
aggaggagcagagattcctgacatgtgtgtaccgagaaaaaagttgctcggaattacctctatttagcgagaaacaatggttcctcagaattttttggtc |
152 |
Q |
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| T |
21926629 |
aggagcagcagagattcctgacatgtgtgtaccgaggaaaaagttgctcggaattacctctatttagcgagaaacaatggttcctcggaattttttggtc |
21926728 |
T |
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| Q |
153 |
ggaattactttcatttcttgtagtg |
177 |
Q |
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||||||||||||||||||||||||| |
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| T |
21926729 |
ggaattactttcatttcttgtagtg |
21926753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 26970803 - 26970866
Alignment:
| Q |
115 |
tttagcgagaaacaatggttcctcagaattttttggtcggaattactttcatttcttgtagtga |
178 |
Q |
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|||||| |||||||| | |||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
26970803 |
tttagcaagaaacaaagtttcctcgaaatttgttggtcggaattaccttcatttcttgtagtga |
26970866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 33239879 - 33239990
Alignment:
| Q |
63 |
gagattcctgacatgtgtgtaccgagaaaaaagttgctcggaattacctctattt-agcgagaaacaatggttcctcagaattttttggtcggaattact |
161 |
Q |
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||||||||||||| | | ||||||| ||| |||| ||||||| |||| ||||| |||||||||| | |||||| |||||||||||| | ||||||| |
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| T |
33239879 |
gagattcctgacacgagcataccgaggaaatagttcctcggaaa-acctttattttagcgagaaaccaaatttcctcggaattttttggttgtaattact |
33239977 |
T |
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| Q |
162 |
ttcatttcttgta |
174 |
Q |
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|||| |||||||| |
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| T |
33239978 |
ttcaattcttgta |
33239990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 41101016 - 41100896
Alignment:
| Q |
57 |
ggagcagagattcctgacatgtgtgtaccgagaaaaaagttgctcggaattacctctattt-agcgagaaacaatggttcctcagaattttttggtcgga |
155 |
Q |
| |
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||||||||||||||||||| ||| ||||||| ||| ||| ||||||| | || ||||| || |||||| | | |||||| ||||||||||||||| |
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| T |
41101016 |
ggagcagagattcctgacacgtgcataccgaggaaattgttcctcggaaa-atctttattttagtgagaaatcaagtttcctcgaaattttttggtcgga |
41100918 |
T |
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| Q |
156 |
attactttcatttcttgtagtg |
177 |
Q |
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||||| |||||||||||||||| |
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| T |
41100917 |
attaccttcatttcttgtagtg |
41100896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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